From owner-dev-commits-ports-main@freebsd.org Fri Jul 2 17:00:51 2021 Return-Path: Delivered-To: dev-commits-ports-main@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id 30E1266F2C8; Fri, 2 Jul 2021 17:00:51 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4GGhDM0nyDz4vWF; Fri, 2 Jul 2021 17:00:51 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 0471217C6A; Fri, 2 Jul 2021 17:00:51 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 162H0ola006406; Fri, 2 Jul 2021 17:00:50 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 162H0odW006405; Fri, 2 Jul 2021 17:00:50 GMT (envelope-from git) Date: Fri, 2 Jul 2021 17:00:50 GMT Message-Id: <202107021700.162H0odW006405@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: 7fd4d4420f37 - main - biology/py-goatools: Tools for processing and visualizing Gene Ontology terms MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 7fd4d4420f371474514cdb696d120e069b11ec21 Auto-Submitted: auto-generated X-BeenThere: dev-commits-ports-main@freebsd.org X-Mailman-Version: 2.1.34 Precedence: list List-Id: Commits to the main branch of the FreeBSD ports repository List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Fri, 02 Jul 2021 17:00:51 -0000 The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=7fd4d4420f371474514cdb696d120e069b11ec21 commit 7fd4d4420f371474514cdb696d120e069b11ec21 Author: Jason W. Bacon AuthorDate: 2021-07-02 17:00:29 +0000 Commit: Jason W. Bacon CommitDate: 2021-07-02 17:00:29 +0000 biology/py-goatools: Tools for processing and visualizing Gene Ontology terms Goatools is a python library for processing Gene Ontology (GO) terms. It includes routines for processing, filtering, and visualizing GO data. --- biology/Makefile | 1 + biology/py-goatools/Makefile | 29 +++++++++++++++++++++++++++++ biology/py-goatools/distinfo | 3 +++ biology/py-goatools/pkg-descr | 4 ++++ 4 files changed, 37 insertions(+) diff --git a/biology/Makefile b/biology/Makefile index 55ed6b8c2735..f02dc903a129 100644 --- a/biology/Makefile +++ b/biology/Makefile @@ -137,6 +137,7 @@ SUBDIR += py-dnaio SUBDIR += py-ete3 SUBDIR += py-gffutils + SUBDIR += py-goatools SUBDIR += py-gtfparse SUBDIR += py-hits SUBDIR += py-loompy diff --git a/biology/py-goatools/Makefile b/biology/py-goatools/Makefile new file mode 100644 index 000000000000..c2b222f46835 --- /dev/null +++ b/biology/py-goatools/Makefile @@ -0,0 +1,29 @@ +PORTNAME= goatools +DISTVERSION= 1.1.6 +CATEGORIES= biology python +MASTER_SITES= CHEESESHOP +PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} + +MAINTAINER= jwb@FreeBSD.org +COMMENT= Tools for processing and visualizing Gene Ontology terms + +LICENSE= BSD2CLAUSE +LICENSE_FILE= ${WRKSRC}/LICENSE + +# xlrd should be == 1.2.0 +RUN_DEPENDS= ${PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} \ + ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}XlsxWriter>0:textproc/py-xlsxwriter@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}statsmodels>0:math/py-statsmodels@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}xlrd>0:textproc/py-xlrd@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}docopt>0:devel/py-docopt@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}pydot>0:graphics/py-pydot@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}requests>0:www/py-requests@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}pygraphviz>0:graphics/py-pygraphviz@${PY_FLAVOR} \ + wget>0:ftp/wget + +USES= python:3.6+ +USE_PYTHON= autoplist distutils + +.include diff --git a/biology/py-goatools/distinfo b/biology/py-goatools/distinfo new file mode 100644 index 000000000000..cdadbfe66214 --- /dev/null +++ b/biology/py-goatools/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1625181597 +SHA256 (goatools-1.1.6.tar.gz) = b631a6a803818673ac815ed5f1e7158d1bd98a3ce5c93b64961dc73bdea56bca +SIZE (goatools-1.1.6.tar.gz) = 15098351 diff --git a/biology/py-goatools/pkg-descr b/biology/py-goatools/pkg-descr new file mode 100644 index 000000000000..d35285e6132e --- /dev/null +++ b/biology/py-goatools/pkg-descr @@ -0,0 +1,4 @@ +Goatools is a python library for processing Gene Ontology (GO) terms. It +includes routines for processing, filtering, and visualizing GO data. + +WWW: https://pypi.python.org/pypi/goatools