Date: Thu, 2 Aug 2018 19:28:36 +0000 (UTC) From: =?UTF-8?Q?Fernando_Apestegu=c3=ada?= <fernape@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r476246 - head/biology/samtools Message-ID: <201808021928.w72JSaCx086949@repo.freebsd.org>
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Author: fernape Date: Thu Aug 2 19:28:36 2018 New Revision: 476246 URL: https://svnweb.freebsd.org/changeset/ports/476246 Log: biology/samtools: update to 1.9 PR: 230171 Submitted by: ndowens.fbsd@yandex.com Approved by: tcberner (mentor) Differential Revision: https://reviews.freebsd.org/D16569 Modified: head/biology/samtools/Makefile head/biology/samtools/distinfo Modified: head/biology/samtools/Makefile ============================================================================== --- head/biology/samtools/Makefile Thu Aug 2 19:27:13 2018 (r476245) +++ head/biology/samtools/Makefile Thu Aug 2 19:28:36 2018 (r476246) @@ -2,7 +2,7 @@ # $FreeBSD$ PORTNAME= samtools -PORTVERSION= 1.6 +DISTVERSION= 1.9 CATEGORIES= biology MAINTAINER= cartwright@asu.edu @@ -15,16 +15,15 @@ BUILD_DEPENDS= htslib>=1.6:biology/htslib LIB_DEPENDS= libhts.so:biology/htslib TEST_DEPENDS= bash:shells/bash +USES= autoreconf gmake localbase ncurses \ + perl5 python:env shebangfix + USE_GITHUB= yes -USES= autoreconf gmake ncurses perl5 python:env shebangfix USE_PERL5= test GNU_CONFIGURE= yes SUB_FILES= pkg-message SHEBANG_FILES= misc/*.pl misc/*.py misc/plot-bamstats test/test.pl - -CPPFLAGS+= -I${LOCALBASE}/include -LDFLAGS+= -L${LOCALBASE}/lib TEST_TARGET= test Modified: head/biology/samtools/distinfo ============================================================================== --- head/biology/samtools/distinfo Thu Aug 2 19:27:13 2018 (r476245) +++ head/biology/samtools/distinfo Thu Aug 2 19:28:36 2018 (r476246) @@ -1,3 +1,3 @@ -TIMESTAMP = 1508304738 -SHA256 (samtools-samtools-1.6_GH0.tar.gz) = c0d1ffefe441297ee0eec0e032ac3131519f82fd1a11d38fbcec19e2d5822b28 -SIZE (samtools-samtools-1.6_GH0.tar.gz) = 4014195 +TIMESTAMP = 1532906637 +SHA256 (samtools-samtools-1.9_GH0.tar.gz) = 211600bd180d01030b3fe25baa7ae1c105106bed6c3f8d993f41dd278d44c637 +SIZE (samtools-samtools-1.9_GH0.tar.gz) = 4098992
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