From nobody Wed Jul 26 06:20:38 2023 X-Original-To: dev-commits-ports-all@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4R9kKf63xPz4pC7Y; Wed, 26 Jul 2023 06:20:38 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4R9kKf58yRz4QSJ; Wed, 26 Jul 2023 06:20:38 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1690352438; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=b2Fkw/47XeLB6AJslxBOCe1+Y227kTZRLdhi0S5PniY=; b=KI0usPtx3nJ32Ig/1d4xxbuPlJPsbj+2joQ/CBLr0C6fTYI/Cy5puytV08CHGGszGr5UIB j7kzfmDln0xxMFPex9PAgZFlYv+IvWmriZH9P7QVpb6JwskwE1hdPCvCKKwGfFfC6rjOGA a6TaEgKhG94JObhIkCfeAAkyYxmIUwThfT2k7W0vtBqG/bOtpHZsSMd7WVDRiBn+3wBcVQ cfbncrnWZlqXzBnjQyRrZeIlestTmIL71ElGtA94FsRK+LD9rFlNl3WnAREd5Fseg9Do5V DaYtyixqHZnyBtJZWrdQZRNWRG3FB2Pu3zRH2nHdtkw7X2K15mszTVNJqsB6vg== ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1690352438; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=b2Fkw/47XeLB6AJslxBOCe1+Y227kTZRLdhi0S5PniY=; b=rDzQvS8lsZhkJtrZDoz0aYKc8skDrZzUCSjk5NQCevbeoBqc8e3Y7Kr9IVEkyj32kp8o8j 7ydmvsmI6YuwHISHGEHM1zPbWdSBw/9hLBztmzhGr3z+w7o6O71xEQlkWIu8+mjv00JS9w UgKKd2fwomF/xU/IXBaoQU4Ofog7yLJw4Coz25h1N+yDvClxedYAh4DTis9UP+x0MClPha KrYBQfB7Y7D4ka6R869a7gl2rLSUPDt+BMsY5pNbkTVwlONMin6ashQzukhj9nqSo9RYt9 PI+8B4dYc1e7XKJQoVDpJTqvkEvgArpd9o2oI/GJsdpi49lZ/ALoayiz4tLtgw== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1690352438; a=rsa-sha256; cv=none; b=nfwt05DGBYBD1vAa7T+YA70hWYmnUfvrwFjl04yidjjadCk2Q3RyF89FrN0CiX20Vr49al WXqU3fAySe1Cj6ooz65sVD7CYoM27l6M0UjKnhglOR4CydJMGszT7x6ejqpPBNqR3Twwwu XFSGyL37mTe7uThCmxbuSDpvkGiLvdlSPtwdsMKT7f/EOm61VQ6t9E4fN2DbEGcE68l5C4 nZKovPhhhpMVNT4QNOOypcb+RJJ5C6NtHP2GzNZyfdDl/8sY2lTv7FuSdFK/1if1EtRRkf T59y/cByLNOvLZgIIhEWW0NVje6VtwD/dDXnLJ8d8OebIliLehRBJhymsYlUFQ== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4R9kKf3ylKzWyS; Wed, 26 Jul 2023 06:20:38 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.17.1/8.17.1) with ESMTP id 36Q6KcY7018771; Wed, 26 Jul 2023 06:20:38 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.17.1/8.17.1/Submit) id 36Q6KcgU018770; Wed, 26 Jul 2023 06:20:38 GMT (envelope-from git) Date: Wed, 26 Jul 2023 06:20:38 GMT Message-Id: <202307260620.36Q6KcgU018770@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Yuri Victorovich Subject: git: c47b62f07513 - main - misc/py-anndata: Re-add port: Annotated multivariate observation data List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-all@freebsd.org X-BeenThere: dev-commits-ports-all@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: yuri X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: c47b62f07513ab8bc9d71c915e4391b31e32ac02 Auto-Submitted: auto-generated The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=c47b62f07513ab8bc9d71c915e4391b31e32ac02 commit c47b62f07513ab8bc9d71c915e4391b31e32ac02 Author: Yuri Victorovich AuthorDate: 2023-07-26 05:59:37 +0000 Commit: Yuri Victorovich CommitDate: 2023-07-26 06:20:27 +0000 misc/py-anndata: Re-add port: Annotated multivariate observation data --- misc/Makefile | 1 + misc/py-anndata/Makefile | 30 ++++++++++++++++++++++++++++++ misc/py-anndata/distinfo | 3 +++ misc/py-anndata/pkg-descr | 2 ++ 4 files changed, 36 insertions(+) diff --git a/misc/Makefile b/misc/Makefile index 747b20b246ae..d308e8be8249 100644 --- a/misc/Makefile +++ b/misc/Makefile @@ -396,6 +396,7 @@ SUBDIR += py-SimpleSoapy SUBDIR += py-SoapySDR SUBDIR += py-alive-progress + SUBDIR += py-anndata SUBDIR += py-apache-beam SUBDIR += py-ascii-magic SUBDIR += py-boost-histogram diff --git a/misc/py-anndata/Makefile b/misc/py-anndata/Makefile new file mode 100644 index 000000000000..b351b11c862e --- /dev/null +++ b/misc/py-anndata/Makefile @@ -0,0 +1,30 @@ +PORTNAME= anndata +DISTVERSION= 0.9.2 +CATEGORIES= misc python +MASTER_SITES= CHEESESHOP +PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Annotated multivariate observation data +WWW= https://github.com/theislab/anndata + +LICENSE= BSD3CLAUSE +LICENSE_FILE= ${WRKSRC}/LICENSE + +PY_DEPENDS= ${PYTHON_PKGNAMEPREFIX}h5py>=3:science/py-h5py@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}natsort>0:devel/py-natsort@${PY_FLAVOR} \ + ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}packaging>=20:devel/py-packaging@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}pandas>=1.1.1:math/py-pandas@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}scipy>1.4:science/py-scipy@${PY_FLAVOR} +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}flit-core>=3.4:devel/py-flit-core@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}setuptools_scm>0:devel/py-setuptools_scm@${PY_FLAVOR} \ + ${PY_DEPENDS} +RUN_DEPENDS= ${PY_DEPENDS} + +USES= python:3.8+ +USE_PYTHON= pep517 autoplist + +NO_ARCH= yes + +.include diff --git a/misc/py-anndata/distinfo b/misc/py-anndata/distinfo new file mode 100644 index 000000000000..44ce294abd5f --- /dev/null +++ b/misc/py-anndata/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1690347364 +SHA256 (anndata-0.9.2.tar.gz) = e5b8383d09723af674cae7ad0c2ef53eb1f8c73949b7f4c182a6e30f42196327 +SIZE (anndata-0.9.2.tar.gz) = 93755 diff --git a/misc/py-anndata/pkg-descr b/misc/py-anndata/pkg-descr new file mode 100644 index 000000000000..c241084f6fea --- /dev/null +++ b/misc/py-anndata/pkg-descr @@ -0,0 +1,2 @@ +AnnData provides a scalable way of keeping track of data and learned +annotations.