From owner-dev-commits-ports-all@freebsd.org Mon Sep 27 12:17:31 2021 Return-Path: Delivered-To: dev-commits-ports-all@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id F30716B4E05; Mon, 27 Sep 2021 12:17:31 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4HJ1qH6VTQz3CxJ; Mon, 27 Sep 2021 12:17:31 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id BB0C810D7C; Mon, 27 Sep 2021 12:17:31 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 18RCHVSN034738; Mon, 27 Sep 2021 12:17:31 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 18RCHVIx034737; Mon, 27 Sep 2021 12:17:31 GMT (envelope-from git) Date: Mon, 27 Sep 2021 12:17:31 GMT Message-Id: <202109271217.18RCHVIx034737@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: 96d32d811873 - main - biology/biostar-tools: Add biology/kallisto run depend to metaport MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 96d32d811873af3c99e0e6380de7f6dba3603399 Auto-Submitted: auto-generated X-BeenThere: dev-commits-ports-all@freebsd.org X-Mailman-Version: 2.1.34 Precedence: list List-Id: Commit messages for all branches of the ports repository List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Mon, 27 Sep 2021 12:17:32 -0000 The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=96d32d811873af3c99e0e6380de7f6dba3603399 commit 96d32d811873af3c99e0e6380de7f6dba3603399 Author: Jason W. Bacon AuthorDate: 2021-09-27 12:14:45 +0000 Commit: Jason W. Bacon CommitDate: 2021-09-27 12:14:45 +0000 biology/biostar-tools: Add biology/kallisto run depend to metaport Also clean up other deps for consistency --- biology/biostar-tools/Makefile | 9 +++++---- biology/biostar-tools/distinfo | 2 +- 2 files changed, 6 insertions(+), 5 deletions(-) diff --git a/biology/biostar-tools/Makefile b/biology/biostar-tools/Makefile index 67ccc93ab5ad..820774928d6d 100644 --- a/biology/biostar-tools/Makefile +++ b/biology/biostar-tools/Makefile @@ -1,5 +1,5 @@ PORTNAME= biostar-tools -PORTVERSION= 1.6.0 +PORTVERSION= 1.7.0 CATEGORIES= biology python MAINTAINER= jwb@FreeBSD.org @@ -24,8 +24,8 @@ RUN_DEPENDS= wget>0:ftp/wget \ picard-tools>0:biology/picard-tools \ bbmap>0:biology/bbmap \ minimap2>0:biology/minimap2 \ - bwa>=0:biology/bwa \ - bowtie2>=0:biology/bowtie2 \ + bwa>0:biology/bwa \ + bowtie2>0:biology/bowtie2 \ samtools>0:biology/samtools \ emboss>0:biology/emboss \ bedtools>0:biology/bedtools \ @@ -59,7 +59,8 @@ RUN_DEPENDS= wget>0:ftp/wget \ mafft>0:biology/mafft \ clustal-omega>0:biology/clustal-omega \ ${PYTHON_PKGNAMEPREFIX}pywgsim>0:biology/py-pywgsim@${PY_FLAVOR} \ - sam2pairwise:biology/sam2pairwise + sam2pairwise>0:biology/sam2pairwise \ + kallisto>0:biology/kallisto USES= metaport python diff --git a/biology/biostar-tools/distinfo b/biology/biostar-tools/distinfo index eff441099c51..b4ad4f4ea3af 100644 --- a/biology/biostar-tools/distinfo +++ b/biology/biostar-tools/distinfo @@ -1 +1 @@ -TIMESTAMP = 1631047196 +TIMESTAMP = 1632744796