From owner-svn-ports-head@freebsd.org Sun Dec 18 15:25:05 2016 Return-Path: Delivered-To: svn-ports-head@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id A10EBC86A5A; Sun, 18 Dec 2016 15:25:05 +0000 (UTC) (envelope-from sunpoet@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mx1.freebsd.org (Postfix) with ESMTPS id 61E7A12E3; Sun, 18 Dec 2016 15:25:05 +0000 (UTC) (envelope-from sunpoet@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id uBIFP4a2033802; Sun, 18 Dec 2016 15:25:04 GMT (envelope-from sunpoet@FreeBSD.org) Received: (from sunpoet@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id uBIFP4tS033800; Sun, 18 Dec 2016 15:25:04 GMT (envelope-from sunpoet@FreeBSD.org) Message-Id: <201612181525.uBIFP4tS033800@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: sunpoet set sender to sunpoet@FreeBSD.org using -f From: Sunpoet Po-Chuan Hsieh Date: Sun, 18 Dec 2016 15:25:04 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r428868 - in head/biology: . p5-BioPerl p5-bioperl X-SVN-Group: ports-head MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-head@freebsd.org X-Mailman-Version: 2.1.23 Precedence: list List-Id: SVN commit messages for the ports tree for head List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sun, 18 Dec 2016 15:25:05 -0000 Author: sunpoet Date: Sun Dec 18 15:25:04 2016 New Revision: 428868 URL: https://svnweb.freebsd.org/changeset/ports/428868 Log: - Move biology/p5-bioperl to biology/p5-BioPerl - Sort *_DEPENDS - Bump PORTREVISION for dependent ports Added: head/biology/p5-BioPerl/ - copied from r428867, head/biology/p5-bioperl/ Deleted: head/biology/p5-bioperl/ Modified: head/biology/Makefile head/biology/p5-BioPerl/Makefile Modified: head/biology/Makefile ============================================================================== --- head/biology/Makefile Sun Dec 18 15:23:25 2016 (r428867) +++ head/biology/Makefile Sun Dec 18 15:25:04 2016 (r428868) @@ -67,7 +67,7 @@ SUBDIR += p5-Bio-NEXUS SUBDIR += p5-Bio-Phylo SUBDIR += p5-Bio-SCF - SUBDIR += p5-bioperl + SUBDIR += p5-BioPerl SUBDIR += p5-bioperl-run SUBDIR += p5-transdecoder SUBDIR += paml Modified: head/biology/p5-BioPerl/Makefile ============================================================================== --- head/biology/p5-bioperl/Makefile Sun Dec 18 15:23:25 2016 (r428867) +++ head/biology/p5-BioPerl/Makefile Sun Dec 18 15:25:04 2016 (r428868) @@ -1,14 +1,13 @@ # Created by: Johann Visagie # $FreeBSD$ -PORTNAME= bioperl +PORTNAME= BioPerl PORTVERSION= 1.6.924 -PORTREVISION= 4 +PORTREVISION= 5 CATEGORIES= biology perl5 MASTER_SITES= CPAN MASTER_SITE_SUBDIR= CPAN:CJFIELDS PKGNAMEPREFIX= p5- -DISTNAME= BioPerl-${PORTVERSION} MAINTAINER= perl@FreeBSD.org COMMENT= Collection of Perl modules for bioinformatics @@ -21,8 +20,8 @@ BUILD_DEPENDS= p5-Algorithm-Munkres>=0:m p5-Class-AutoClass>=0:devel/p5-Class-AutoClass \ p5-Clone>=0:devel/p5-Clone \ p5-Convert-Binary-C>=0:converters/p5-Convert-Binary-C \ - p5-Data-Stag>=0:devel/p5-Data-Stag \ p5-DBD-mysql>=0:databases/p5-DBD-mysql \ + p5-Data-Stag>=0:devel/p5-Data-Stag \ p5-Error>=0:lang/p5-Error \ p5-GD>=0:graphics/p5-GD \ p5-GD-SVG>=0:graphics/p5-GD-SVG \ @@ -30,16 +29,16 @@ BUILD_DEPENDS= p5-Algorithm-Munkres>=0:m p5-GraphViz>=0:graphics/p5-GraphViz \ p5-HTML-Parser>=0:www/p5-HTML-Parser \ p5-HTML-TableExtract>=2:www/p5-HTML-TableExtract \ - p5-IO-stringy>=0:devel/p5-IO-stringy \ p5-IO-String>=0:devel/p5-IO-String \ + p5-IO-stringy>=0:devel/p5-IO-stringy \ p5-Math-Random>=0:math/p5-Math-Random \ p5-PostScript>=0:print/p5-PostScript \ p5-SOAP-Lite>=0:net/p5-SOAP-Lite \ + p5-SVG>=0:textproc/p5-SVG \ + p5-SVG-Graph>=0:graphics/p5-SVG-Graph \ p5-Set-Scalar>=0:devel/p5-Set-Scalar \ p5-Sort-Naturally>=1:textproc/p5-Sort-Naturally \ p5-Spreadsheet-ParseExcel>=0:textproc/p5-Spreadsheet-ParseExcel \ - p5-SVG>=0:textproc/p5-SVG \ - p5-SVG-Graph>=0:graphics/p5-SVG-Graph \ p5-Test-Most>=0:devel/p5-Test-Most \ p5-Text-Shellwords>=0:textproc/p5-Text-Shellwords \ p5-Text-Tabs+Wrap>=0:textproc/p5-Text-Tabs+Wrap \ @@ -56,7 +55,6 @@ BUILD_DEPENDS= p5-Algorithm-Munkres>=0:m p5-YAML>=0:textproc/p5-YAML \ p5-libwww>=0:www/p5-libwww \ p5-libxml>=0:textproc/p5-libxml - RUN_DEPENDS:= ${BUILD_DEPENDS} USES= perl5