Date: Thu, 5 Jan 2023 23:21:36 GMT From: "Jason W. Bacon" <jwb@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: 193567cc9e20 - main - biology/samtools: Update to 1.16.1 Message-ID: <202301052321.305NLaeL003608@gitrepo.freebsd.org>
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The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=193567cc9e20e9ecb305506d92f522fc77dd18e4 commit 193567cc9e20e9ecb305506d92f522fc77dd18e4 Author: Jason W. Bacon <jwb@FreeBSD.org> AuthorDate: 2023-01-05 23:17:34 +0000 Commit: Jason W. Bacon <jwb@FreeBSD.org> CommitDate: 2023-01-05 23:17:34 +0000 biology/samtools: Update to 1.16.1 New "reference" subcommand to extract CRAM features (1.16) Numerous minor enhancements and bug fixes Changes: https://github.com/samtools/samtools/releases --- biology/samtools/Makefile | 2 +- biology/samtools/distinfo | 6 +++--- biology/samtools/pkg-plist | 1 + 3 files changed, 5 insertions(+), 4 deletions(-) diff --git a/biology/samtools/Makefile b/biology/samtools/Makefile index cbdfaa3b607b..64b06bff07e8 100644 --- a/biology/samtools/Makefile +++ b/biology/samtools/Makefile @@ -1,5 +1,5 @@ PORTNAME= samtools -DISTVERSION= 1.15 +DISTVERSION= 1.16.1 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org diff --git a/biology/samtools/distinfo b/biology/samtools/distinfo index 19439fbc44f5..d0c7b4cbb765 100644 --- a/biology/samtools/distinfo +++ b/biology/samtools/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1645831653 -SHA256 (samtools-samtools-1.15_GH0.tar.gz) = 5109a17f221b36291e4bc3ad68a00c28515d4f20a16b4e23806055661ca0df31 -SIZE (samtools-samtools-1.15_GH0.tar.gz) = 4970205 +TIMESTAMP = 1672094602 +SHA256 (samtools-samtools-1.16.1_GH0.tar.gz) = 70a7f358088929272d8c22d6063290ac8420f5351fba237a99fe17851a45d8be +SIZE (samtools-samtools-1.16.1_GH0.tar.gz) = 4992787 diff --git a/biology/samtools/pkg-plist b/biology/samtools/pkg-plist index aafc040158e0..1d228254f042 100644 --- a/biology/samtools/pkg-plist +++ b/biology/samtools/pkg-plist @@ -48,6 +48,7 @@ man/man1/samtools-merge.1.gz man/man1/samtools-mpileup.1.gz man/man1/samtools-phase.1.gz man/man1/samtools-quickcheck.1.gz +man/man1/samtools-reference.1.gz man/man1/samtools-reheader.1.gz man/man1/samtools-rmdup.1.gz man/man1/samtools-samples.1.gz
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