Date: Sun, 17 Dec 2023 19:01:51 GMT From: Yuri Victorovich <yuri@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: f47c4702d35c - main - science/py-trx-python: New port: Experiments with new file format for tractography Message-ID: <202312171901.3BHJ1pTo055331@gitrepo.freebsd.org>
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The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=f47c4702d35c68b06f643f35c9cb97aa064e4bb5 commit f47c4702d35c68b06f643f35c9cb97aa064e4bb5 Author: Yuri Victorovich <yuri@FreeBSD.org> AuthorDate: 2023-12-17 18:01:42 +0000 Commit: Yuri Victorovich <yuri@FreeBSD.org> CommitDate: 2023-12-17 19:01:48 +0000 science/py-trx-python: New port: Experiments with new file format for tractography --- science/Makefile | 1 + science/py-trx-python/Makefile | 34 ++++++++++++++++++++++++++++++++++ science/py-trx-python/distinfo | 3 +++ science/py-trx-python/pkg-descr | 2 ++ 4 files changed, 40 insertions(+) diff --git a/science/Makefile b/science/Makefile index 54349ac30d32..7652e118ab37 100644 --- a/science/Makefile +++ b/science/Makefile @@ -442,6 +442,7 @@ SUBDIR += py-thewalrus SUBDIR += py-tobler SUBDIR += py-trainstation + SUBDIR += py-trx-python SUBDIR += py-tweedledum SUBDIR += py-vedo SUBDIR += py-veusz diff --git a/science/py-trx-python/Makefile b/science/py-trx-python/Makefile new file mode 100644 index 000000000000..affec6e6d4b7 --- /dev/null +++ b/science/py-trx-python/Makefile @@ -0,0 +1,34 @@ +PORTNAME= trx-python # this project is planned to be merged into DIPY (science/py-dipy) +DISTVERSION= 0.2.9 +CATEGORIES= science python +MASTER_SITES= PYPI +PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Experiments with new file format for tractography +WWW= https://tee-ar-ex.github.io/trx-python/ + +LICENSE= BSD3CLAUSE +LICENSE_FILE= ${WRKSRC}/LICENSE + +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}deepdiff>0:devel/py-deepdiff@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}nibabel>0:science/py-nibabel@${PY_FLAVOR} \ + ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}packaging>=19.0:devel/py-packaging@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}setuptools_scm>=3.4:devel/py-setuptools_scm@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}setuptools_scm_git_archive>0:devel/py-setuptools_scm_git_archive@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}wheel>0:devel/py-wheel@${PY_FLAVOR} +RUN_DEPENDS+= ${PYTHON_PKGNAMEPREFIX}setuptools_scm>0:devel/py-setuptools_scm@${PY_FLAVOR} # mistaken dependency, see https://github.com/tee-ar-ex/trx-python/issues/73 +TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}flake8>=0:devel/py-flake8@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}psutil>0:sysutils/py-psutil@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}pytest-console-scripts>0:devel/py-pytest-console-scripts@${PY_FLAVOR} + +USES= python +USE_PYTHON= pep517 cython autoplist pytest # few tests fail due to missing files + +#USE_GITHUB= yes +#GH_ACCOUNT= tee-ar-ex + +TEST_ENV= ${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} + +.include <bsd.port.mk> diff --git a/science/py-trx-python/distinfo b/science/py-trx-python/distinfo new file mode 100644 index 000000000000..6ad4dbd64b8f --- /dev/null +++ b/science/py-trx-python/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1702835339 +SHA256 (trx-python-0.2.9.tar.gz) = 16b4104d7c991879c601f60e8d587decac50ce60388aae8d0c754a92136d1caf +SIZE (trx-python-0.2.9.tar.gz) = 86016 diff --git a/science/py-trx-python/pkg-descr b/science/py-trx-python/pkg-descr new file mode 100644 index 000000000000..ca7ed7ee4295 --- /dev/null +++ b/science/py-trx-python/pkg-descr @@ -0,0 +1,2 @@ +trx is a Python implementation of the trx file-format +for tractography data.
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