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Date:      Fri, 16 Oct 2020 23:43:17 +0000 (UTC)
From:      Joseph Mingrone <jrm@FreeBSD.org>
To:        ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org
Subject:   svn commit: r552526 - in head/biology/hyphy: . files
Message-ID:  <202010162343.09GNhHGd028774@repo.freebsd.org>
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Author: jrm
Date: Fri Oct 16 23:43:17 2020
New Revision: 552526
URL: https://svnweb.freebsd.org/changeset/ports/552526

Log:
  biology/hyphy: Update to version 2.5.20

Added:
  head/biology/hyphy/files/
  head/biology/hyphy/files/patch-src_core_matrix.cpp   (contents, props changed)
Modified:
  head/biology/hyphy/Makefile   (contents, props changed)
  head/biology/hyphy/distinfo   (contents, props changed)

Modified: head/biology/hyphy/Makefile
==============================================================================
--- head/biology/hyphy/Makefile	Fri Oct 16 21:42:13 2020	(r552525)
+++ head/biology/hyphy/Makefile	Fri Oct 16 23:43:17 2020	(r552526)
@@ -1,7 +1,7 @@
 # $FreeBSD$
 
 PORTNAME=	hyphy
-DISTVERSION=	2.5.19
+DISTVERSION=	2.5.20
 CATEGORIES=	biology
 
 MAINTAINER=	jrm@FreeBSD.org

Modified: head/biology/hyphy/distinfo
==============================================================================
--- head/biology/hyphy/distinfo	Fri Oct 16 21:42:13 2020	(r552525)
+++ head/biology/hyphy/distinfo	Fri Oct 16 23:43:17 2020	(r552526)
@@ -1,3 +1,3 @@
-TIMESTAMP = 1602549659
-SHA256 (veg-hyphy-2.5.19_GH0.tar.gz) = 44464c24b380aa25161639cee3ab224d9b5c29fe8079281be2bdde8f171a2e1b
-SIZE (veg-hyphy-2.5.19_GH0.tar.gz) = 5315357
+TIMESTAMP = 1602886612
+SHA256 (veg-hyphy-2.5.20_GH0.tar.gz) = 6c8e2cfbb9d61ab9d6677f3fca5ea51e729943bef213bed6d03dd0f6d6078925
+SIZE (veg-hyphy-2.5.20_GH0.tar.gz) = 5325417

Added: head/biology/hyphy/files/patch-src_core_matrix.cpp
==============================================================================
--- /dev/null	00:00:00 1970	(empty, because file is newly added)
+++ head/biology/hyphy/files/patch-src_core_matrix.cpp	Fri Oct 16 23:43:17 2020	(r552526)
@@ -0,0 +1,11 @@
+--- src/core/matrix.cpp.orig	2020-10-16 23:15:05 UTC
++++ src/core/matrix.cpp
+@@ -2236,7 +2236,7 @@ bool    _Matrix::IncreaseStorage    (void) {
+         } else {
+             theData = (hyFloat*) MemReallocate(theData, lDim*sizeof(void*));
+             for (long i = lDim-allocationBlock; i < lDim; i++) {
+-                theData [i] = ZEROPOINTER;
++                theData [i] = ZEROOBJECT;
+             }
+         }
+     } else {

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