Date: Sun, 8 Aug 2010 22:00:25 GMT From: Volodymyr Kostyrko <c.kworr@gmail.com> To: freebsd-ports-bugs@FreeBSD.org Subject: Re: ports/146801: can't build graphics/py-opengl because math/py-numpy fails. Message-ID: <201008082200.o78M0PVB037994@freefall.freebsd.org>
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The following reply was made to PR ports/146801; it has been noted by GNATS.
From: Volodymyr Kostyrko <c.kworr@gmail.com>
To: bug-followup@FreeBSD.org, jimmiejaz@gmail.com
Cc:
Subject: Re: ports/146801: can't build graphics/py-opengl because math/py-numpy
fails.
Date: Mon, 09 Aug 2010 00:59:50 +0300
I can confirm this one.
binutils-2.20.1_3
gcc-4.4.5.20100803
The first error reported was:
===> License check disabled, port has not defined LICENSE
===> Found saved configuration for py26-numpy-1.4.1,1
===> Extracting for py26-numpy-1.4.1,1
=> MD5 Checksum OK for numpy-1.4.1.tar.gz.
=> SHA256 Checksum OK for numpy-1.4.1.tar.gz.
=> MD5 Checksum OK for numpybook.pdf.
=> SHA256 Checksum OK for numpybook.pdf.
=> MD5 Checksum OK for i387/fenv.c?p=203441.
=> SHA256 Checksum OK for i387/fenv.c?p=203441.
=> MD5 Checksum OK for i387/fenv.h?p=203441.
=> SHA256 Checksum OK for i387/fenv.h?p=203441.
===> Patching for py26-numpy-1.4.1,1
===> Applying FreeBSD patches for py26-numpy-1.4.1,1
===> py26-numpy-1.4.1,1 depends on file: /usr/local/bin/python2.6 - found
===> py26-numpy-1.4.1,1 depends on executable: gcc44 - found
===> py26-numpy-1.4.1,1 depends on shared library: lapack.4 - found
===> py26-numpy-1.4.1,1 depends on shared library: blas.2 - found
===> Configuring for py26-numpy-1.4.1,1
Running from numpy source directory.
F2PY Version 2
blas_opt_info:
blas_mkl_info:
/tmp/ports/usr/ports/math/py-numpy/work/numpy-1.4.1/numpy/distutils/system_info.py:520:
UserWarning: Specified path /usr/local/include/suitesparse is invalid.
warnings.warn('Specified path %s is invalid.' % d)
libraries mkl,vml,guide not found in /usr/lib
libraries mkl,vml,guide not found in /usr/local/lib
libraries mkl,vml,guide not found in
/usr/local/lib/gcc44/gcc/i386-portbld-freebsd8.1/4.4.5/../../../
NOT AVAILABLE
atlas_blas_threads_info:
Setting PTATLAS=ATLAS
Setting PTATLAS=ATLAS
Setting PTATLAS=ATLAS
FOUND:
libraries = ['lapack', 'blas']
library_dirs = ['/usr/local/lib']
language = c
/tmp/ports/usr/ports/math/py-numpy/work/numpy-1.4.1/numpy/distutils/command/config.py:394:
DeprecationWarning:
+++++++++++++++++++++++++++++++++++++++++++++++++
Usage of get_output is deprecated: please do not
use it anymore, and avoid configuration checks
involving running executable on the target machine.
+++++++++++++++++++++++++++++++++++++++++++++++++
DeprecationWarning)
customize GnuFCompiler
Found executable /usr/local/bin/gfortran44
gnu: no Fortran 90 compiler found
gnu: no Fortran 90 compiler found
customize Gnu95FCompiler
customize Gnu95FCompiler
customize Gnu95FCompiler using config
compiling '_configtest.c':
/* This file is generated from numpy/distutils/system_info.py */
void ATL_buildinfo(void);
int main(void) {
ATL_buildinfo();
return 0;
}
C compiler: gcc44 -DNDEBUG -O2 -pipe -march=athlon-xp
-D__wchar_t=wchar_t -DTHREAD_STACK_SIZE=0x20000 -fno-strict-aliasing -O2
-pipe -march=athlon-xp -Wl,-rpath=/usr/local/lib/gcc4
4 -fno-strict-aliasing -fPIC
compile options: '-c'
gcc44: _configtest.c
gcc44 _configtest.o -L/usr/local/lib -llapack -lblas -o _configtest
_configtest.o: In function `main':
_configtest.c:(.text+0x16): undefined reference to `ATL_buildinfo'
/usr/local/lib/liblapack.so: undefined reference to
`_gfortran_concat_string'
/usr/local/lib/liblapack.so: undefined reference to `csqrt'
/usr/local/lib/liblapack.so: undefined reference to
`_gfortran_st_write_done'
/usr/local/lib/liblapack.so: undefined reference to
`_gfortran_transfer_integer'
/usr/local/lib/liblapack.so: undefined reference to `cabs'
/usr/local/lib/liblapack.so: undefined reference to `csqrtf'
/usr/local/lib/liblapack.so: undefined reference to `powf'
/usr/local/lib/liblapack.so: undefined reference to `_gfortran_stop_numeric'
/usr/local/lib/liblapack.so: undefined reference to `_gfortran_pow_i4_i4'
/usr/local/lib/liblapack.so: undefined reference to
`_gfortran_string_len_trim'
/usr/local/lib/liblapack.so: undefined reference to `_gfortran_st_write'
/usr/local/lib/liblapack.so: undefined reference to `log'
/usr/local/lib/liblapack.so: undefined reference to `lroundf'
/usr/local/lib/liblapack.so: undefined reference to
`_gfortran_compare_string'
/usr/local/lib/liblapack.so: undefined reference to `_gfortran_etime'
/usr/local/lib/libblas.so: undefined reference to
`_gfortran_runtime_error_at'
/usr/local/lib/liblapack.so: undefined reference to `logf'
/usr/local/lib/liblapack.so: undefined reference to `cabsf'
/usr/local/lib/liblapack.so: undefined reference to `cosf'
/usr/local/lib/liblapack.so: undefined reference to `lround'
/usr/local/lib/liblapack.so: undefined reference to `pow'
/usr/local/lib/liblapack.so: undefined reference to `cexp'
/usr/local/lib/liblapack.so: undefined reference to
`_gfortran_transfer_character'
/usr/local/lib/liblapack.so: undefined reference to `cos'
/usr/local/lib/liblapack.so: undefined reference to `cexpf'
/usr/local/lib/liblapack.so: undefined reference to `log10'
/usr/local/lib/liblapack.so: undefined reference to `log10f'
collect2: ld returned 1 exit status
_configtest.o: In function `main':
_configtest.c:(.text+0x16): undefined reference to `ATL_buildinfo'
/usr/local/lib/liblapack.so: undefined reference to
`_gfortran_concat_string'
/usr/local/lib/liblapack.so: undefined reference to `csqrt'
/usr/local/lib/liblapack.so: undefined reference to
`_gfortran_st_write_done'
/usr/local/lib/liblapack.so: undefined reference to
`_gfortran_transfer_integer'
/usr/local/lib/liblapack.so: undefined reference to `cabs'
/usr/local/lib/liblapack.so: undefined reference to `csqrtf'
/usr/local/lib/liblapack.so: undefined reference to `powf'
/usr/local/lib/liblapack.so: undefined reference to `_gfortran_stop_numeric'
/usr/local/lib/liblapack.so: undefined reference to `_gfortran_pow_i4_i4'
/usr/local/lib/liblapack.so: undefined reference to
`_gfortran_string_len_trim'
/usr/local/lib/liblapack.so: undefined reference to `_gfortran_st_write'
/usr/local/lib/liblapack.so: undefined reference to `log'
/usr/local/lib/liblapack.so: undefined reference to `lroundf'
/usr/local/lib/liblapack.so: undefined reference to
`_gfortran_compare_string'
/usr/local/lib/liblapack.so: undefined reference to `_gfortran_etime'
/usr/local/lib/libblas.so: undefined reference to
`_gfortran_runtime_error_at'
/usr/local/lib/liblapack.so: undefined reference to `logf'
/usr/local/lib/liblapack.so: undefined reference to `cabsf'
/usr/local/lib/liblapack.so: undefined reference to `cosf'
/usr/local/lib/liblapack.so: undefined reference to `lround'
/usr/local/lib/liblapack.so: undefined reference to `pow'
/usr/local/lib/liblapack.so: undefined reference to `cexp'
/usr/local/lib/liblapack.so: undefined reference to
`_gfortran_transfer_character'
/usr/local/lib/liblapack.so: undefined reference to `cos'
/usr/local/lib/liblapack.so: undefined reference to `cexpf'
/usr/local/lib/liblapack.so: undefined reference to `log10'
/usr/local/lib/liblapack.so: undefined reference to `log10f'
collect2: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
Status: 255
Output:
FOUND:
libraries = ['lapack', 'blas']
library_dirs = ['/usr/local/lib']
language = c
define_macros = [('NO_ATLAS_INFO', 2)]
lapack_opt_info:
lapack_mkl_info:
mkl_info:
libraries mkl,vml,guide not found in /usr/lib
libraries mkl,vml,guide not found in /usr/local/lib
libraries mkl,vml,guide not found in
/usr/local/lib/gcc44/gcc/i386-portbld-freebsd8.1/4.4.5/../../../
NOT AVAILABLE
NOT AVAILABLE
atlas_threads_info:
Setting PTATLAS=ATLAS
libraries lapack_atlas not found in /usr/local/lib
libraries alapack_r not found in /usr/local/lib
libraries lapack,blas not found in
/usr/local/lib/gcc44/gcc/i386-portbld-freebsd8.1/4.4.5/../../../
libraries lapack_atlas not found in
/usr/local/lib/gcc44/gcc/i386-portbld-freebsd8.1/4.4.5/../../../
numpy.distutils.system_info.atlas_threads_info
Setting PTATLAS=ATLAS
/tmp/ports/usr/ports/math/py-numpy/work/numpy-1.4.1/numpy/distutils/system_info.py:973:
UserWarning:
*********************************************************************
Could not find lapack library within the ATLAS installation.
*********************************************************************
warnings.warn(message)
Setting PTATLAS=ATLAS
FOUND:
libraries = ['lapack', 'blas', 'gfortran', 'm', 'pthread']
library_dirs = ['/usr/local/lib']
language = c
define_macros = [('ATLAS_WITHOUT_LAPACK', None)]
customize GnuFCompiler
gnu: no Fortran 90 compiler found
gnu: no Fortran 90 compiler found
customize Gnu95FCompiler
customize Gnu95FCompiler
customize Gnu95FCompiler using config
compiling '_configtest.c':
/* This file is generated from numpy/distutils/system_info.py */
void ATL_buildinfo(void);
int main(void) {
ATL_buildinfo();
return 0;
}
C compiler: gcc44 -DNDEBUG -O2 -pipe -march=athlon-xp
-D__wchar_t=wchar_t -DTHREAD_STACK_SIZE=0x20000 -fno-strict-aliasing -O2
-pipe -march=athlon-xp -Wl,-rpath=/usr/local/lib/gcc4
4 -fno-strict-aliasing -fPIC
compile options: '-c'
gcc44: _configtest.c
gcc44 _configtest.o -L/usr/local/lib -llapack -lblas -lgfortran -lm
-lpthread -o _configtest
_configtest.o: In function `main':
_configtest.c:(.text+0x16): undefined reference to `ATL_buildinfo'
collect2: ld returned 1 exit status
_configtest.o: In function `main':
_configtest.c:(.text+0x16): undefined reference to `ATL_buildinfo'
collect2: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o
Status: 255
Output:
lapack_info:
libraries lapack not found in /usr/lib
FOUND:
I have tried rebuilding lapack but nothing changes.
--
Sphinx of black quartz judge my vow.
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