From owner-svn-ports-head@freebsd.org Sat May 16 03:11:06 2020 Return-Path: Delivered-To: svn-ports-head@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id A64DB2E22A9; Sat, 16 May 2020 03:11:06 +0000 (UTC) (envelope-from yuri@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) server-signature RSA-PSS (4096 bits) client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 49P9K62pk5z3KSv; Sat, 16 May 2020 03:11:06 +0000 (UTC) (envelope-from yuri@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 5BB1971EF; Sat, 16 May 2020 03:11:06 +0000 (UTC) (envelope-from yuri@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id 04G3B6dY025530; Sat, 16 May 2020 03:11:06 GMT (envelope-from yuri@FreeBSD.org) Received: (from yuri@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id 04G3B54Q025527; Sat, 16 May 2020 03:11:05 GMT (envelope-from yuri@FreeBSD.org) Message-Id: <202005160311.04G3B54Q025527@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: yuri set sender to yuri@FreeBSD.org using -f From: Yuri Victorovich Date: Sat, 16 May 2020 03:11:05 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r535347 - in head/biology: . py-hits X-SVN-Group: ports-head X-SVN-Commit-Author: yuri X-SVN-Commit-Paths: in head/biology: . py-hits X-SVN-Commit-Revision: 535347 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-head@freebsd.org X-Mailman-Version: 2.1.33 Precedence: list List-Id: SVN commit messages for the ports tree for head List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sat, 16 May 2020 03:11:06 -0000 Author: yuri Date: Sat May 16 03:11:05 2020 New Revision: 535347 URL: https://svnweb.freebsd.org/changeset/ports/535347 Log: New port: biology/py-hits: Utilities for processing high-throughput sequencing experiments Added: head/biology/py-hits/ head/biology/py-hits/Makefile (contents, props changed) head/biology/py-hits/distinfo (contents, props changed) head/biology/py-hits/pkg-descr (contents, props changed) Modified: head/biology/Makefile Modified: head/biology/Makefile ============================================================================== --- head/biology/Makefile Sat May 16 02:29:20 2020 (r535346) +++ head/biology/Makefile Sat May 16 03:11:05 2020 (r535347) @@ -129,6 +129,7 @@ SUBDIR += py-fastTSNE SUBDIR += py-gffutils SUBDIR += py-gtfparse + SUBDIR += py-hits SUBDIR += py-loompy SUBDIR += py-macs2 SUBDIR += py-multiqc Added: head/biology/py-hits/Makefile ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/py-hits/Makefile Sat May 16 03:11:05 2020 (r535347) @@ -0,0 +1,20 @@ +# $FreeBSD$ + +PORTNAME= hits +PORTVERSION= 0.1 +CATEGORIES= biology python +MASTER_SITES= CHEESESHOP +PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Utilities for processing high-throughput sequencing experiments + +LICENSE= GPLv3 + +USES= python:3.6+ +USE_PYTHON= distutils cython autoplist + +post-install: + @${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/hits/*.so + +.include Added: head/biology/py-hits/distinfo ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/py-hits/distinfo Sat May 16 03:11:05 2020 (r535347) @@ -0,0 +1,3 @@ +TIMESTAMP = 1589596183 +SHA256 (hits-0.1.tar.gz) = d522045c7c5f7bb68645c99bf5fde7601ecfb8f13d7c0d94090a5fd84bb86feb +SIZE (hits-0.1.tar.gz) = 1056911 Added: head/biology/py-hits/pkg-descr ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/py-hits/pkg-descr Sat May 16 03:11:05 2020 (r535347) @@ -0,0 +1,3 @@ +Utilities for processing high-throughput sequencing experiments. + +WWW: https://github.com/jeffhussmann/hits