Date: Sun, 10 May 2020 21:40:09 +0000 (UTC) From: Yuri Victorovich <yuri@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r534867 - in head/science/ghemical: . files Message-ID: <202005102140.04ALe9sg050592@repo.freebsd.org>
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Author: yuri Date: Sun May 10 21:40:08 2020 New Revision: 534867 URL: https://svnweb.freebsd.org/changeset/ports/534867 Log: science/ghemical: Not compatible with the upcoming OpenBabel-3 => disable this internal option Added: head/science/ghemical/files/patch-src_filetrans.cpp (contents, props changed) Modified: head/science/ghemical/Makefile Modified: head/science/ghemical/Makefile ============================================================================== --- head/science/ghemical/Makefile Sun May 10 21:36:49 2020 (r534866) +++ head/science/ghemical/Makefile Sun May 10 21:40:08 2020 (r534867) @@ -3,7 +3,7 @@ PORTNAME= ghemical PORTVERSION= 3.0.0 -PORTREVISION= 19 +PORTREVISION= 20 CATEGORIES= science MASTER_SITES= http://bioinformatics.org/ghemical/download/%SUBDIR%/ MASTER_SITE_SUBDIR= release20111012 current @@ -22,7 +22,6 @@ LIB_DEPENDS= libblas.so:math/blas \ libint.so:science/libint \ liblapack.so:math/lapack \ liboglappth.so:science/liboglappth \ - libopenbabel.so:science/openbabel \ libmopac7.so:biology/mopac \ libmpqc.so:science/mpqc RUN_DEPENDS= xdg-open:devel/xdg-utils @@ -30,7 +29,7 @@ RUN_DEPENDS= xdg-open:devel/xdg-utils USES= compiler:c++11-lang fortran gettext gl gmake gnome pathfix \ pkgconfig xorg GNU_CONFIGURE= yes -CONFIGURE_ARGS= --enable-gtk --enable-threads --enable-openbabel +CONFIGURE_ARGS= --enable-gtk --enable-threads --disable-openbabel # not compatible with OpenBabel-3 so it is disabled USE_GNOME= cairo gdkpixbuf2 gtk20 libglade2 intltool pangox-compat USE_GL= gl glu USE_XORG= x11 @@ -43,5 +42,6 @@ PLIST_SUB= GHEMICAL_VERSION="${PORTVERSION}" post-patch: @${REINPLACE_CMD} -e \ 's|"mozilla "|"xdg-open "|' ${WRKSRC}/src/gtk_app.cpp + @${REINPLACE_CMD} -e 's|openbabel-2.0|openbabel-3|' ${WRKSRC}/configure # attempt at OpenBabel-3 compatibility .include <bsd.port.mk> Added: head/science/ghemical/files/patch-src_filetrans.cpp ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/science/ghemical/files/patch-src_filetrans.cpp Sun May 10 21:40:08 2020 (r534867) @@ -0,0 +1,28 @@ +attempt at OpenBabel-3 compatibility +--- src/filetrans.cpp.orig 2011-09-14 17:10:38 UTC ++++ src/filetrans.cpp +@@ -38,6 +38,8 @@ using namespace std; + #include <openbabel/data.h> + #include <openbabel/typer.h> + #include <openbabel/obconversion.h> ++#include <openbabel/atom.h> ++#include <openbabel/bond.h> + + using namespace std; + using namespace OpenBabel; +@@ -46,6 +48,7 @@ using namespace OpenBabel; + #define FORMAT_PATH (char *) project::appdata_path + #endif // FORMAT_PATH + ++#if 0 + namespace OpenBabel + { + extern OBAromaticTyper aromtyper; +@@ -55,6 +58,7 @@ namespace OpenBabel + extern OBChainsParser chainsparser; + extern OBIsotopeTable isotab; + } ++#endif + + /*################################################################################################*/ +
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