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Date:      Sun, 3 Mar 2019 08:04:17 GMT
From:      pkg-fallout@FreeBSD.org
To:        pkg-fallout@FreeBSD.org
Subject:   [package - 120armv7-quarterly][science/py-h5py] Failed for py36-h5py-2.8.0_2 in build
Message-ID:  <201903030804.x2384H1K079756@beefy13.nyi.freebsd.org>

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You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     sunpoet@FreeBSD.org
Last committer: gerald@FreeBSD.org
Ident:          $FreeBSD: branches/2019Q1/science/py-h5py/Makefile 487272 2018-12-12 01:35:33Z gerald $
Log URL:        http://beefy13.nyi.freebsd.org/data/120armv7-quarterly/494456/logs/py36-h5py-2.8.0_2.log
Build URL:      http://beefy13.nyi.freebsd.org/build.html?mastername=120armv7-quarterly&build=494456
Log:

=>> Building science/py-h5py
build started at Sun Mar  3 08:03:41 UTC 2019
port directory: /usr/ports/science/py-h5py
package name: py36-h5py-2.8.0_2
building for: FreeBSD 120armv7-quarterly-job-20 12.0-RELEASE-p3 FreeBSD 12.0-RELEASE-p3 1200086 arm
maintained by: sunpoet@FreeBSD.org
Makefile ident:      $FreeBSD: branches/2019Q1/science/py-h5py/Makefile 487272 2018-12-12 01:35:33Z gerald $
Poudriere version: 3.2.8-3-g02cc9753
Host OSVERSION: 1300009
Jail OSVERSION: 1200086
Job Id: 20

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UNAME_r=12.0-RELEASE-p3
BLOCKSIZE=K
MAIL=/var/mail/root
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POUDRIERE_VERSION=3.2.8-3-g02cc9753
MASTERMNT=/usr/local/poudriere/data/.m/120armv7-quarterly/ref
POUDRIERE_BUILD_TYPE=bulk
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SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/120armv7-quarterly/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
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POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=py36
DEPENDS_ARGS=
MAKE_ARGS= FLAVOR=py36
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
===> The following configuration options are available for py36-h5py-2.8.0_2:
     DOCS=on: Build and/or install documentation
     EXAMPLES=on: Build and/or install examples
===> Use 'make config' to modify these settings
---End OPTIONS List---

--MAINTAINER--
sunpoet@FreeBSD.org
--End MAINTAINER--

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
PYTHON="/usr/local/bin/python3.6" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-h5py/work-py36  XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-h5py/work-py36  HOME=/wrkdirs/usr/ports/science/py-h5py/work-py36 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-h5py/work-py36/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-h5py/work-py36  XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-h5py/work-py36  HOME=/wrkdirs/usr/ports/science/py-h5py/work-py36 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-h5py/work-py36/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="/nxb-bin/usr/bin/cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local  LOCALBASE=/usr/local  CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe  -fno-strict-aliasing "  CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS=""  LDFLAGS=" " LIBS=""  CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing  "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
PORTDOCS="" PORTEXAMPLES="" PYTHON_INCLUDEDIR=include/python3.6m  PYTHON_LIBDIR=lib/python3.6  PYTHON_PLATFORM=freebsd12  PYTHON_PYOEXTENSION=opt-1.pyc  PYTHON_SITELIBDIR=lib/python3.6/site-packages  PYTHON_SUFFIX=36  PYTHON_VER=3.6  PYTHON_VERSION=python3.6 PYTHON2="@comment " PYTHON3="" OSREL=12.0 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/py36-h5py"  EXAMPLESDIR="share/examples/py36-h5py"  DATADIR="share/py36-h5py"  WWWDIR="www/py36-h5py"  ETCDIR="etc/py36-h5py"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/py36-h5py DOCSDIR=/usr/local/share/doc/py36-h5py EXAMPLESDIR=/usr/local/share/examples/py36-h5py  WWWDIR=/usr/local/www/py36-h5py ETCDIR=/usr/local/etc/py36-h5py
--End SUB_LIST--

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DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
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ARCH=${MACHINE_ARCH}
#### /usr/local/etc/poudriere.d/make.conf ####
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# try the next mirror on checksum failure.  It currently retries the same
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# try the next if the size is mismatched though.
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MAKE_JOBS_NUMBER=2

# stable/10 includes src.conf too late but make.conf is in sys.mk
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CC_OUTPUT_9d218390_6bcac02b=yes
CC_OUTPUT_9d218390_67d20829=yes
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SIZE=/nxb-bin/usr/bin/size
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SED=/nxb-bin/usr/bin/sed
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
MAKE=/nxb-bin/usr/bin/make
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---End make.nxb.conf---
--Resource limits--
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file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  33554432
stack size              (kbytes, -s)  524288
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
open files                      (-n)  1024
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>  License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   py36-h5py-2.8.0_2 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.10.5_5.txz
[120armv7-quarterly-job-20] Installing pkg-1.10.5_5...
[120armv7-quarterly-job-20] Extracting pkg-1.10.5_5: .......... done
===>   py36-h5py-2.8.0_2 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of py36-h5py-2.8.0_2
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py36-h5py-2.8.0_2 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py36-h5py-2.8.0_2 for building
=> SHA256 Checksum OK for h5py-2.8.0.tar.gz.
<snip>
[120armv7-quarterly-job-20] Extracting py36-numpy-1.15.4_1,1: .......... done
Message from gcc8-8.2.0_4:

To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using

  -Wl,-rpath=/usr/local/lib/gcc8

For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
Message from cblas-1.0_10:

===>   NOTICE:

The cblas port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
Message from python36-3.6.7:

===========================================================================

Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:

py36-gdbm       databases/py-gdbm@py36
py36-sqlite3    databases/py-sqlite3@py36
py36-tkinter    x11-toolkits/py-tkinter@py36

===========================================================================
Message from py36-setuptools-40.6.2:

*******************************************************************

  Only /usr/local/bin/easy_install-3.6 script has been installed
  since Python 3.6 is not the default Python version.

*******************************************************************
Message from metis-5.1.0_6:

===>   NOTICE:

The metis port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
===>   py36-h5py-2.8.0_2 depends on package: py36-numpy>0 - found
===>   Returning to build of py36-h5py-2.8.0_2
===>   py36-h5py-2.8.0_2 depends on package: py36-pkgconfig>=0 - not found
===>   Installing existing package /packages/All/py36-pkgconfig-1.4.0.txz
[120armv7-quarterly-job-20] Installing py36-pkgconfig-1.4.0...
[120armv7-quarterly-job-20] Extracting py36-pkgconfig-1.4.0: .......... done
===>   py36-h5py-2.8.0_2 depends on package: py36-pkgconfig>=0 - found
===>   Returning to build of py36-h5py-2.8.0_2
===>   py36-h5py-2.8.0_2 depends on package: py36-six>=0 - not found
===>   Installing existing package /packages/All/py36-six-1.12.0.txz
[120armv7-quarterly-job-20] Installing py36-six-1.12.0...
[120armv7-quarterly-job-20] Extracting py36-six-1.12.0: .......... done
===>   py36-h5py-2.8.0_2 depends on package: py36-six>=0 - found
===>   Returning to build of py36-h5py-2.8.0_2
===>   py36-h5py-2.8.0_2 depends on executable: cython-3.6 - not found
===>   Installing existing package /packages/All/py36-cython-0.29.txz
[120armv7-quarterly-job-20] Installing py36-cython-0.29...
[120armv7-quarterly-job-20] Extracting py36-cython-0.29: .......... done
===>   py36-h5py-2.8.0_2 depends on executable: cython-3.6 - found
===>   Returning to build of py36-h5py-2.8.0_2
===>   py36-h5py-2.8.0_2 depends on package: py36-setuptools>0 - found
===>   py36-h5py-2.8.0_2 depends on file: /usr/local/bin/python3.6 - found
===========================================================================
=======================<phase: lib-depends    >============================
===>   py36-h5py-2.8.0_2 depends on shared library: libhdf5.so - not found
===>   Installing existing package /packages/All/hdf5-1.10.2_1.txz
[120armv7-quarterly-job-20] Installing hdf5-1.10.2_1...
[120armv7-quarterly-job-20] `-- Installing hdf-szip-2.1_2...
[120armv7-quarterly-job-20] `-- Extracting hdf-szip-2.1_2: .......... done
[120armv7-quarterly-job-20] Extracting hdf5-1.10.2_1: .......... done
===>   py36-h5py-2.8.0_2 depends on shared library: libhdf5.so - found (/usr/local/lib/libhdf5.so)
===>   Returning to build of py36-h5py-2.8.0_2
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for py36-h5py-2.8.0_2
running config
===========================================================================
=======================<phase: build          >============================
===>  Building for py36-h5py-2.8.0_2
running build
running build_py
creating build
creating build/lib.freebsd-12.0-RELEASE-p3-arm-3.6
creating build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py
copying h5py/ipy_completer.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py
copying h5py/__init__.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py
copying h5py/version.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py
copying h5py/highlevel.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py
copying h5py/h5py_warnings.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py
creating build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/_hl
copying h5py/_hl/group.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/_hl
copying h5py/_hl/files.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/_hl
copying h5py/_hl/compat.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/_hl
copying h5py/_hl/__init__.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/_hl
copying h5py/_hl/dataset.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/_hl
copying h5py/_hl/base.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/_hl
copying h5py/_hl/datatype.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/_hl
copying h5py/_hl/selections.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/_hl
copying h5py/_hl/filters.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/_hl
copying h5py/_hl/selections2.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/_hl
copying h5py/_hl/dims.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/_hl
copying h5py/_hl/attrs.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/_hl
creating build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests
copying h5py/tests/common.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests
copying h5py/tests/__init__.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests
creating build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_file.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_h5f.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/old
copying h5py/tests/old/__init__.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_base.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_attrs.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_h5.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_group.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_file_image.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_objects.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_h5t.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_h5d_direct_chunk_write.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_dataset.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_datatype.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_attrs_data.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_dimension_scales.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_h5p.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_slicing.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/old
copying h5py/tests/old/test_selections.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/old
creating build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/hl
copying h5py/tests/hl/test_threads.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/hl
copying h5py/tests/hl/test_file.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/hl
copying h5py/tests/hl/__init__.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/hl
copying h5py/tests/hl/test_dims_dimensionproxy.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/hl
copying h5py/tests/hl/test_filters.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/hl
copying h5py/tests/hl/test_dataset_getitem.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/hl
copying h5py/tests/hl/test_dataset_swmr.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/hl
copying h5py/tests/hl/test_attribute_create.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/hl
copying h5py/tests/hl/test_datatype.py -> build/lib.freebsd-12.0-RELEASE-p3-arm-3.6/h5py/tests/hl
running build_ext
Traceback (most recent call last):
  File "/usr/local/lib/python3.6/site-packages/numpy/core/__init__.py", line 16, in <module>
    from . import multiarray
ImportError: /usr/local/lib/libblas.so.2: Undefined symbol "__aeabi_uidiv@GCC_3.5"

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "setup.py", line 168, in <module>
    cmdclass = CMDCLASS,
  File "/usr/local/lib/python3.6/site-packages/setuptools/__init__.py", line 143, in setup
    return distutils.core.setup(**attrs)
  File "/usr/local/lib/python3.6/distutils/core.py", line 148, in setup
    dist.run_commands()
  File "/usr/local/lib/python3.6/distutils/dist.py", line 955, in run_commands
    self.run_command(cmd)
  File "/usr/local/lib/python3.6/distutils/dist.py", line 974, in run_command
    cmd_obj.run()
  File "/usr/local/lib/python3.6/distutils/command/build.py", line 135, in run
    self.run_command(cmd_name)
  File "/usr/local/lib/python3.6/distutils/cmd.py", line 313, in run_command
    self.distribution.run_command(command)
  File "/usr/local/lib/python3.6/distutils/dist.py", line 974, in run_command
    cmd_obj.run()
  File "/wrkdirs/usr/ports/science/py-h5py/work-py36/h5py-2.8.0/setup_build.py", line 157, in run
    import numpy
  File "/usr/local/lib/python3.6/site-packages/numpy/__init__.py", line 142, in <module>
    from . import add_newdocs
  File "/usr/local/lib/python3.6/site-packages/numpy/add_newdocs.py", line 13, in <module>
    from numpy.lib import add_newdoc
  File "/usr/local/lib/python3.6/site-packages/numpy/lib/__init__.py", line 8, in <module>
    from .type_check import *
  File "/usr/local/lib/python3.6/site-packages/numpy/lib/type_check.py", line 11, in <module>
    import numpy.core.numeric as _nx
  File "/usr/local/lib/python3.6/site-packages/numpy/core/__init__.py", line 26, in <module>
    raise ImportError(msg)
ImportError: 
Importing the multiarray numpy extension module failed.  Most
likely you are trying to import a failed build of numpy.
If you're working with a numpy git repo, try `git clean -xdf` (removes all
files not under version control).  Otherwise reinstall numpy.

Original error was: /usr/local/lib/libblas.so.2: Undefined symbol "__aeabi_uidiv@GCC_3.5"

*** Error code 1

Stop.
make: stopped in /usr/ports/science/py-h5py



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