Date: Wed, 29 May 2024 08:49:38 GMT From: Yuri Victorovich <yuri@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: 35fcb76960e9 - main - misc/adios2: update 2.9.1 =?utf-8?Q?=E2=86=92?= 2.10.1 Message-ID: <202405290849.44T8ncXl007078@gitrepo.freebsd.org>
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The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=35fcb76960e9379f2db04dbf8398bf34f579736a commit 35fcb76960e9379f2db04dbf8398bf34f579736a Author: Yuri Victorovich <yuri@FreeBSD.org> AuthorDate: 2024-05-29 08:28:02 +0000 Commit: Yuri Victorovich <yuri@FreeBSD.org> CommitDate: 2024-05-29 08:49:20 +0000 misc/adios2: update 2.9.1 → 2.10.1 Reported by: portscout --- misc/adios2/Makefile | 15 ++-- misc/adios2/distinfo | 6 +- misc/adios2/files/patch-cmake_DetectOptions.cmake | 20 +++-- misc/adios2/pkg-plist | 102 ++++++++++++++-------- 4 files changed, 89 insertions(+), 54 deletions(-) diff --git a/misc/adios2/Makefile b/misc/adios2/Makefile index 236948e8492d..0db413aa4481 100644 --- a/misc/adios2/Makefile +++ b/misc/adios2/Makefile @@ -1,7 +1,6 @@ PORTNAME= adios2 DISTVERSIONPREFIX= v -DISTVERSION= 2.9.1 -PORTREVISION= 2 +DISTVERSION= 2.10.1 CATEGORIES= misc science MAINTAINER= yuri@FreeBSD.org @@ -20,22 +19,22 @@ BUILD_DEPENDS= bash:shells/bash \ pybind11>0:devel/pybind11 \ ${PYTHON_PKGNAMEPREFIX}pybind11>=2.4:devel/py-pybind11@${PY_FLAVOR} \ ${PY_DEPENDS} -LIB_DEPENDS= libblosc.so:archivers/c-blosc \ +LIB_DEPENDS= libblosc2.so:archivers/c-blosc2 \ libepoll-shim.so:devel/libepoll-shim \ libfabric.so:net/libfabric \ - libffi.so:devel/libffi \ libhdf5.so:science/hdf5 \ + liblz4.so:archivers/liblz4 \ libmpi.so:net/mpich \ - libpng.so:graphics/png \ + libpng16.so:graphics/png \ libsodium.so:security/libsodium \ - libsz.so:science/libaec \ libzmq.so:net/libzmq4 \ - libzfp.so:devel/zfp + libzfp.so:devel/zfp \ + libzstd.so:archivers/zstd RUN_DEPENDS= bash:shells/bash \ ${PY_DEPENDS} USES= bison cmake:testing compiler:c++11-lang fortran localbase:ldflags pkgconfig \ - perl5 python shebangfix + perl5 python shebangfix sqlite USE_LDCONFIG= yes SHEBANG_FILES= cmake/install/post/adios2-config.pre.sh.in cmake/install/post/generate-adios2-config.sh.in \ diff --git a/misc/adios2/distinfo b/misc/adios2/distinfo index e9cd06dbe0c4..3268f17f26fb 100644 --- a/misc/adios2/distinfo +++ b/misc/adios2/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1691126373 -SHA256 (ornladios-ADIOS2-v2.9.1_GH0.tar.gz) = ddfa32c14494250ee8a48ef1c97a1bf6442c15484bbbd4669228a0f90242f4f9 -SIZE (ornladios-ADIOS2-v2.9.1_GH0.tar.gz) = 6253728 +TIMESTAMP = 1716957131 +SHA256 (ornladios-ADIOS2-v2.10.1_GH0.tar.gz) = ce776f3a451994f4979c6bd6d946917a749290a37b7433c0254759b02695ad85 +SIZE (ornladios-ADIOS2-v2.10.1_GH0.tar.gz) = 7207041 diff --git a/misc/adios2/files/patch-cmake_DetectOptions.cmake b/misc/adios2/files/patch-cmake_DetectOptions.cmake index 52e5d5c6488b..7bc4df81f7d5 100644 --- a/misc/adios2/files/patch-cmake_DetectOptions.cmake +++ b/misc/adios2/files/patch-cmake_DetectOptions.cmake @@ -1,23 +1,27 @@ - fix the python version ---- cmake/DetectOptions.cmake.orig 2023-03-30 20:01:59 UTC +--- cmake/DetectOptions.cmake.orig 2024-05-29 01:42:27 UTC +++ cmake/DetectOptions.cmake -@@ -351,12 +351,12 @@ if(NOT SHARED_LIBS_SUPPORTED) +@@ -394,15 +394,15 @@ if(ADIOS2_USE_PIP) endif() - if(ADIOS2_USE_Python STREQUAL AUTO) -- find_package(Python 3 COMPONENTS Interpreter Development NumPy) -+ find_package(Python ${FREEBSD_PYTHON_VERSION} EXACT COMPONENTS Interpreter Development NumPy) + if(ADIOS2_USE_PIP) +- find_package(Python 3.8 REQUIRED COMPONENTS Interpreter Development.Module) ++ find_package(Python ${FREEBSD_PYTHON_VERSION} REQUIRED COMPONENTS Interpreter Development.Module) + set(ADIOS2_HAVE_PIP TRUE) + elseif(ADIOS2_USE_Python STREQUAL AUTO) +- find_package(Python 3.8 COMPONENTS Interpreter Development) ++ find_package(Python ${FREEBSD_PYTHON_VERSION} COMPONENTS Interpreter Development) if(Python_FOUND AND ADIOS2_HAVE_MPI) find_package(PythonModule COMPONENTS mpi4py mpi4py/mpi4py.h) endif() elseif(ADIOS2_USE_Python) -- find_package(Python 3 REQUIRED COMPONENTS Interpreter Development NumPy) -+ find_package(Python ${FREEBSD_PYTHON_VERSION} EXACT REQUIRED COMPONENTS Interpreter Development NumPy) +- find_package(Python 3.8 REQUIRED COMPONENTS Interpreter Development) ++ find_package(Python ${FREEBSD_PYTHON_VERSION} REQUIRED COMPONENTS Interpreter Development) if(ADIOS2_HAVE_MPI) find_package(PythonModule REQUIRED COMPONENTS mpi4py mpi4py/mpi4py.h) endif() -@@ -373,7 +373,7 @@ endif() +@@ -419,7 +419,7 @@ if(BUILD_TESTING AND NOT Python_Interpreter_FOUND) # Even if no python support, we still want the interpreter for tests if(BUILD_TESTING AND NOT Python_Interpreter_FOUND) diff --git a/misc/adios2/pkg-plist b/misc/adios2/pkg-plist index 660d96b2b050..cb43ca0f8354 100644 --- a/misc/adios2/pkg-plist +++ b/misc/adios2/pkg-plist @@ -1,6 +1,8 @@ +bin/adios2_campaign_manager bin/adios2_deactivate_bp bin/adios2_iotest bin/adios2_json_pp +bin/adios2_remote_server bin/adios2_reorganize bin/adios2_reorganize_mpi bin/bp2h5 @@ -9,7 +11,6 @@ bin/bp4dbg bin/bp5dbg bin/bpls bin/sst_conn_tool -include/Info.h include/adios2.h include/adios2/c/adios2_c_adios.h include/adios2/c/adios2_c_attribute.h @@ -29,11 +30,13 @@ include/adios2/core/CoreTypes.h include/adios2/core/Engine.h include/adios2/core/Group.h include/adios2/core/IO.h +include/adios2/core/Info.h include/adios2/core/Operator.h include/adios2/core/Span.h include/adios2/core/Stream.h include/adios2/core/Variable.h include/adios2/core/VariableBase.h +include/adios2/core/VariableDerived.h include/adios2/core/VariableStruct.h include/adios2/cxx11/ADIOS.h include/adios2/cxx11/ADIOS.inl @@ -56,6 +59,13 @@ include/adios2/engine/bp4/BP4Writer.h include/adios2/engine/bp5/BP5Engine.h include/adios2/engine/bp5/BP5Reader.h include/adios2/engine/bp5/BP5Writer.h +include/adios2/engine/campaign/CampaignData.h +include/adios2/engine/campaign/CampaignManager.h +include/adios2/engine/campaign/CampaignReader.h +include/adios2/engine/campaign/CampaignRecord.h +include/adios2/engine/daos/DaosEngine.h +include/adios2/engine/daos/DaosReader.h +include/adios2/engine/daos/DaosWriter.h include/adios2/engine/dataman/DataManMonitor.h include/adios2/engine/dataman/DataManReader.h include/adios2/engine/dataman/DataManWriter.h @@ -102,6 +112,7 @@ include/adios2/fortran/adios2_engine_put_mod.mod include/adios2/fortran/adios2_functions_allocate_mod.mod include/adios2/fortran/adios2_functions_mod.mod include/adios2/fortran/adios2_io_define_attribute_mod.mod +include/adios2/fortran/adios2_io_define_derived_variable_mod.mod include/adios2/fortran/adios2_io_define_variable_mod.mod include/adios2/fortran/adios2_io_mod.mod include/adios2/fortran/adios2_io_mod.smod @@ -155,6 +166,7 @@ include/adios2/operator/compress/CompressSirius.h include/adios2/operator/compress/CompressZFP.h include/adios2/operator/plugin/PluginOperator.h include/adios2/operator/plugin/PluginOperatorInterface.h +include/adios2/operator/refactor/RefactorMDR.h include/adios2/toolkit/aggregator/mpi/MPIAggregator.h include/adios2/toolkit/aggregator/mpi/MPIChain.h include/adios2/toolkit/aggregator/mpi/MPIShmChain.h @@ -162,6 +174,9 @@ include/adios2/toolkit/burstbuffer/FileDrainer.h include/adios2/toolkit/burstbuffer/FileDrainerSingleThread.h include/adios2/toolkit/dataspaces/ds.h include/adios2/toolkit/dataspaces/ds_data.h +include/adios2/toolkit/derived/ExprHelper.h +include/adios2/toolkit/derived/Expression.h +include/adios2/toolkit/derived/Function.h include/adios2/toolkit/format/bp/BPBase.h include/adios2/toolkit/format/bp/BPBase.inl include/adios2/toolkit/format/bp/BPSerializer.h @@ -181,6 +196,7 @@ include/adios2/toolkit/format/buffer/Buffer.h include/adios2/toolkit/format/buffer/BufferV.h include/adios2/toolkit/format/buffer/chunk/ChunkV.h include/adios2/toolkit/format/buffer/ffs/BufferFFS.h +include/adios2/toolkit/format/buffer/heap/BufferMalloc.h include/adios2/toolkit/format/buffer/heap/BufferSTL.h include/adios2/toolkit/format/buffer/ipc/BufferSystemV.h include/adios2/toolkit/format/buffer/malloc/MallocV.h @@ -193,6 +209,8 @@ include/adios2/toolkit/query/Index.h include/adios2/toolkit/query/Query.h include/adios2/toolkit/query/Util.h include/adios2/toolkit/query/Worker.h +include/adios2/toolkit/remote/Remote.h +include/adios2/toolkit/remote/remote_common.h include/adios2/toolkit/shm/SerializeProcesses.h include/adios2/toolkit/shm/Spinlock.h include/adios2/toolkit/shm/TokenChain.h @@ -207,8 +225,10 @@ include/adios2/toolkit/transport/Transport.h include/adios2/toolkit/transport/file/FileAWSSDK.h include/adios2/toolkit/transport/file/FileDaos.h include/adios2/toolkit/transport/file/FileFStream.h +include/adios2/toolkit/transport/file/FileHTTP.h include/adios2/toolkit/transport/file/FileIME.h include/adios2/toolkit/transport/file/FilePOSIX.h +include/adios2/toolkit/transport/file/FileRemote.h include/adios2/toolkit/transport/file/FileStdio.h include/adios2/toolkit/transport/null/NullTransport.h include/adios2/toolkit/transport/shm/ShmSystemV.h @@ -216,16 +236,13 @@ include/adios2/toolkit/transportman/TransportMan.h include/adios2/toolkit/zmq/zmqpubsub/ZmqPubSub.h include/adios2/toolkit/zmq/zmqreqrep/ZmqReqRep.h include/adios2_c.h -lib/adios2_evpath_modules/libadios2_cmenet.so -lib/adios2_evpath_modules/libadios2_cmfabric.so -lib/adios2_evpath_modules/libadios2_cmmulticast.so -lib/adios2_evpath_modules/libadios2_cmselect.so -lib/adios2_evpath_modules/libadios2_cmsockets.so -lib/adios2_evpath_modules/libadios2_cmudp.so -lib/adios2_evpath_modules/libadios2_cmzplenet.so +lib/adios2-evpath-modules-2_10/libadios2_cmenet.so +lib/adios2-evpath-modules-2_10/libadios2_cmmulticast.so +lib/adios2-evpath-modules-2_10/libadios2_cmselect.so +lib/adios2-evpath-modules-2_10/libadios2_cmsockets.so +lib/adios2-evpath-modules-2_10/libadios2_cmudp.so lib/cmake/adios2/CMakeFindDependencyMacro.cmake lib/cmake/adios2/FindBZip2.cmake -lib/cmake/adios2/FindBlosc2.cmake lib/cmake/adios2/FindCrayDRC.cmake lib/cmake/adios2/FindDAOS.cmake lib/cmake/adios2/FindDataSpaces.cmake @@ -299,55 +316,70 @@ lib/cmake/adios2/upstream/FindPython/Support.cmake lib/cmake/adios2/upstream/GoogleTest.cmake lib/libEncryptionOperator.so lib/libadios2_atl.so -lib/libadios2_atl.so.2 -lib/libadios2_atl.so.2.2.1 +lib/libadios2_atl.so.2.10 +lib/libadios2_atl.so.2.10.1 lib/libadios2_c.so -lib/libadios2_c.so.2 -lib/libadios2_c.so.2.9.1 +lib/libadios2_c.so.2.10 +lib/libadios2_c.so.2.10.1 lib/libadios2_c_mpi.so -lib/libadios2_c_mpi.so.2 -lib/libadios2_c_mpi.so.2.9.1 +lib/libadios2_c_mpi.so.2.10 +lib/libadios2_c_mpi.so.2.10.1 lib/libadios2_core.so -lib/libadios2_core.so.2 -lib/libadios2_core.so.2.9.1 +lib/libadios2_core.so.2.10 +lib/libadios2_core.so.2.10.1 lib/libadios2_core_mpi.so -lib/libadios2_core_mpi.so.2 -lib/libadios2_core_mpi.so.2.9.1 +lib/libadios2_core_mpi.so.2.10 +lib/libadios2_core_mpi.so.2.10.1 lib/libadios2_cxx11.so -lib/libadios2_cxx11.so.2 -lib/libadios2_cxx11.so.2.9.1 +lib/libadios2_cxx11.so.2.10 +lib/libadios2_cxx11.so.2.10.1 lib/libadios2_cxx11_mpi.so -lib/libadios2_cxx11_mpi.so.2 -lib/libadios2_cxx11_mpi.so.2.9.1 +lib/libadios2_cxx11_mpi.so.2.10 +lib/libadios2_cxx11_mpi.so.2.10.1 lib/libadios2_dill.so -lib/libadios2_dill.so.2 -lib/libadios2_dill.so.2.4.1 +lib/libadios2_dill.so.2.10 +lib/libadios2_dill.so.2.10.1 lib/libadios2_enet.so -lib/libadios2_enet.so.1 -lib/libadios2_enet.so.1.3.14 +lib/libadios2_enet.so.2.10 +lib/libadios2_enet.so.2.10.1 lib/libadios2_evpath.so +lib/libadios2_evpath.so.2.10 +lib/libadios2_evpath.so.2.10.1 lib/libadios2_ffs.so -lib/libadios2_ffs.so.2 -lib/libadios2_ffs.so.2.0.0 +lib/libadios2_ffs.so.2.10 +lib/libadios2_ffs.so.2.10.1 lib/libadios2_fortran.so -lib/libadios2_fortran.so.2 -lib/libadios2_fortran.so.2.9.1 +lib/libadios2_fortran.so.2.10 +lib/libadios2_fortran.so.2.10.1 lib/libadios2_fortran_mpi.so -lib/libadios2_fortran_mpi.so.2 -lib/libadios2_fortran_mpi.so.2.9.1 +lib/libadios2_fortran_mpi.so.2.10 +lib/libadios2_fortran_mpi.so.2.10.1 lib/libadios2_perfstubs.so +lib/libadios2_perfstubs.so.2.10 +lib/libadios2_perfstubs.so.2.10.1 %%PYTHON_SITELIBDIR%%/adios2/__init__.py -%%PYTHON_SITELIBDIR%%/adios2/adios2%%PYTHON_EXT_SUFFIX%%.so +%%PYTHON_SITELIBDIR%%/adios2/adios.py +%%PYTHON_SITELIBDIR%%/adios2/attribute.py +%%PYTHON_SITELIBDIR%%/adios2/bindings/__init__.py +%%PYTHON_SITELIBDIR%%/adios2/bindings/adios2_bindings%%PYTHON_EXT_SUFFIX%%.so %%PYTHON_SITELIBDIR%%/adios2/bp4dbg/__init__.py %%PYTHON_SITELIBDIR%%/adios2/bp4dbg/data.py %%PYTHON_SITELIBDIR%%/adios2/bp4dbg/idxtable.py %%PYTHON_SITELIBDIR%%/adios2/bp4dbg/metadata.py %%PYTHON_SITELIBDIR%%/adios2/bp4dbg/utils.py %%PYTHON_SITELIBDIR%%/adios2/bp5dbg/__init__.py -%%PYTHON_SITELIBDIR%%/adios2/bp5dbg/data.py %%PYTHON_SITELIBDIR%%/adios2/bp5dbg/idxtable.py %%PYTHON_SITELIBDIR%%/adios2/bp5dbg/metadata.py +%%PYTHON_SITELIBDIR%%/adios2/bp5dbg/metametadata.py %%PYTHON_SITELIBDIR%%/adios2/bp5dbg/utils.py +%%PYTHON_SITELIBDIR%%/adios2/engine.py +%%PYTHON_SITELIBDIR%%/adios2/file_reader.py +%%PYTHON_SITELIBDIR%%/adios2/io.py +%%PYTHON_SITELIBDIR%%/adios2/operator.py +%%PYTHON_SITELIBDIR%%/adios2/stream.py +%%PYTHON_SITELIBDIR%%/adios2/test/__init__.py +%%PYTHON_SITELIBDIR%%/adios2/test/simple_read_write.py +%%PYTHON_SITELIBDIR%%/adios2/variable.py share/iotest-config/coupling2.xml share/iotest-config/coupling2_blocking_01_simple.txt share/iotest-config/coupling2_blocking_02_dump_result.txt
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