Date: Tue, 31 Aug 2021 22:04:26 GMT From: pkg-fallout@FreeBSD.org To: yuri@FreeBSD.org Cc: pkg-fallout@FreeBSD.org Subject: [exp - 122amd64-default-build-as-user][science/mdynamix] Failed for mdynamix-5.2.8_4 in build Message-ID: <202108312204.17VM4QLY080701@package19.nyi.freebsd.org>
next in thread | raw e-mail | index | archive | help
You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Log URL: http://package19.nyi.freebsd.org/data/122amd64-default-build-as-user/ccb35f95ff87/logs/mdynamix-5.2.8_4.log Build URL: http://package19.nyi.freebsd.org/build.html?mastername=122amd64-default-build-as-user&build=ccb35f95ff87 Log: =>> Building science/mdynamix build started at Tue Aug 31 22:03:56 UTC 2021 port directory: /usr/ports/science/mdynamix package name: mdynamix-5.2.8_4 building for: FreeBSD 122amd64-default-build-as-user-job-02 12.2-RELEASE-p10 FreeBSD 12.2-RELEASE-p10 amd64 maintained by: yuri@FreeBSD.org Makefile ident: Poudriere version: 3.2.8-21-g883afb07 Host OSVERSION: 1400008 Jail OSVERSION: 1202000 Job Id: 02 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1202000 UNAME_v=FreeBSD 12.2-RELEASE-p10 UNAME_r=12.2-RELEASE-p10 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-21-g883afb07 MASTERMNT=/poudriere/data/.m/122amd64-default-build-as-user/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= GID=0 UID=0 PWD=/poudriere/data/.m/122amd64-default-build-as-user/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=122amd64-default-build-as-user SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/poudriere/data/.m/122amd64-default-build-as-user/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran10" FC="gfortran10" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc10 -fallow-argument-mismatch" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc10" MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/science/mdynamix/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/mdynamix/work HOME=/wrkdirs/usr/ports/science/mdynamix/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/mdynamix/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran10" FC="gfortran10" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc10 -fallow-argument-mismatch" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc10" XDG_DATA_HOME=/wrkdirs/usr/ports/science/mdynamix/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/mdynamix/work HOME=/wrkdirs/usr/ports/science/mdynamix/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/mdynamix/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-st rict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc10 -L/usr/local/lib/gcc10 -B/usr/local/bin -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=12.2 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/mdynamix" EXAMPLESDIR="share/examples/mdynamix" DATADIR="share/mdynamix" WWWDIR="www/mdynamix" ETCDIR="etc/mdynamix" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/mdynamix DOCSDIR=/usr/local/share/doc/mdynamix EXAMPLESDIR=/usr/local/share/examples/mdynamix WWWDIR=/usr/local/www/mdynamix ETCDIR=/usr/local/etc/mdynamix --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 10.0.1 (git@github.com:llvm/llvm-project.git llvmorg-10.0.1-0-gef32c611aa2) Target: x86_64-unknown-freebsd12.2 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 10.0.1 (git@github.com:llvm/llvm-project.git llvmorg-10.0.1-0-gef32c611aa2) Target: x86_64-unknown-freebsd12.2 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 10.0.1 (git@github.com:llvm/llvm-project.git llvmorg-10.0.1-0-gef32c611aa2) Target: x86_64-unknown-freebsd12.2 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=amd64 OPSYS=FreeBSD _OSRELEASE=12.2-RELEASE-p10 OSREL=12.2 OSVERSION=1202000 PYTHONBASE=/usr/local HAVE_COMPAT_IA32_KERN=YES CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License GPLv2+ accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> mdynamix-5.2.8_4 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.17.1.pkg [122amd64-default-build-as-user-job-02] Installing pkg-1.17.1... [122amd64-default-build-as-user-job-02] Extracting pkg-1.17.1: .......... done ===> mdynamix-5.2.8_4 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of mdynamix-5.2.8_4 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv2+ accepted by the user ===> Fetching all distfiles required by mdynamix-5.2.8_4 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv2+ accepted by the user ===> Fetching all distfiles required by mdynamix-5.2.8_4 for building => SHA256 Checksum OK for md528.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License GPLv2+ accepted by the user ===> Fetching all distfiles required by mdynamix-5.2.8_4 for building ===> Extracting for mdynamix-5.2.8_4 => SHA256 Checksum OK for md528.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for mdynamix-5.2.8_4 =========================================================================== =======================<phase: build-depends >============================ ===> mdynamix-5.2.8_4 depends on executable: gfortran10 - not found ===> Installing existing package /packages/All/gcc10-10.3.0.pkg [122amd64-default-build-as-user-job-02] Installing gcc10-10.3.0... [122amd64-default-build-as-user-job-02] `-- Installing binutils-2.37,1... [122amd64-default-build-as-user-job-02] | `-- Installing gettext-runtime-0.21... [122amd64-default-build-as-user-job-02] | | `-- Installing indexinfo-0.3.1... [122amd64-default-build-as-user-job-02] | | `-- Extracting indexinfo-0.3.1: .... done [122amd64-default-build-as-user-job-02] | `-- Extracting gettext-runtime-0.21: .......... done [122amd64-default-build-as-user-job-02] `-- Extracting binutils-2.37,1: .......... done [122amd64-default-build-as-user-job-02] `-- Installing gmp-6.2.1... [122amd64-default-build-as-user-job-02] `-- Extracting gmp-6.2.1: .......... done [122amd64-default-build-as-user-job-02] `-- Installing mpc-1.2.0... [122amd64-default-build-as-user-job-02] | `-- Installing mpfr-4.1.0_1... [122amd64-default-build-as-user-job-02] | `-- Extracting mpfr-4.1.0_1: .......... done [122amd64-default-build-as-user-job-02] `-- Extracting mpc-1.2.0: ......... done [122amd64-default-build-as-user-job-02] Extracting gcc10-10.3.0: .......... done ===== Message from gcc10-10.3.0: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc10 <snip> Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(8)/REAL(4)). gfortran -O -Wl,-rpath=/usr/local/lib/gcc10 -fallow-argument-mismatch -ffast-math -c -o service.o service.f mpif77 -O -Wl,-rpath=/usr/local/lib/gcc10 -fallow-argument-mismatch -ffast-math -c -o pimd.o pimd.f mpif.h:551:12: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:552:12: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:557:12: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:560:12: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:551:12: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:552:12: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:557:12: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:560:12: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:551:12: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:552:12: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:557:12: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:560:12: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:551:12: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:552:12: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:557:12: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:560:12: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:551:12: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:552:12: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:557:12: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:560:12: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:551:12: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:552:12: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:557:12: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement mpif.h:560:12: Warning: Legacy Extension: SAVE statement at (1) follows blanket SAVE statement pimd.f:531:25: 531 | call MPI_ALLREDUCE(BUFF,BUF2,IBUF,MPI_REAL, | 1 ..... 1117 | call MPI_ALLREDUCE(BUFF,BUF2,IBUF,MPI_DOUBLE_PRECISION, | 2 Warning: Type mismatch between actual argument at (1) and actual argument at (2) (REAL(4)/REAL(8)). gfortran -O -Wl,-rpath=/usr/local/lib/gcc10 -fallow-argument-mismatch -ffast-math -c -o setup.o setup.f mpif77 -O -Wl,-rpath=/usr/local/lib/gcc10 -fallow-argument-mismatch -ffast-math -c -o setup.o setup.f setup.f:965:72: 965 | DO 100 J = 1,NRY | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 100 at (1) setup.f:966:72: 966 | DO 100 K = 1,NRZ | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 100 at (1) setup.f:965:72: 965 | DO 100 J = 1,NRY | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 100 at (1) setup.f:966:72: 966 | DO 100 K = 1,NRZ | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 100 at (1) gfortran -O -Wl,-rpath=/usr/local/lib/gcc10 -fallow-argument-mismatch -ffast-math -c -o util.o util.f util.f:168:72: 168 | DO 20 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 20 at (1) util.f:169:72: 169 | 20 A(I,J)=A(I,J)/SCL | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 20 at (1) util.f:171:72: 171 | DO 30 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 30 at (1) util.f:177:72: 177 | DO 100 J=1,IU1 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 100 at (1) util.f:178:72: 178 | 100 TES=TES+2.D0*A(I,J)*A(I,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 100 at (1) util.f:185:72: 185 | DO 165 J=1,IUU1 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 165 at (1) util.f:202:72: 202 | IF(K-I)140,135,135 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) util.f:207:72: 207 | 140 IF(K-J)145,150,150 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) util.f:223:72: 223 | IF(M-1)175,170,170 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) util.f:226:72: 226 | 175 IF(TES-RHO)180,180,105 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) util.f:228:72: 228 | DO 190 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 190 at (1) util.f:229:72: 229 | 190 A(I,J)=SCL*A(I,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 190 at (1) util.f:478:72: 478 | IF(NDIM-6)5,5,2 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) util.f:484:72: 484 | IF(I-NDIM)3,6,6 | 1 Warning: Fortran 2018 deleted feature: Arithmetic IF statement at (1) gfortran -Wl,-rpath=/usr/local/lib/gcc10 -L/usr/local/lib/gcc10 -B/usr/local/bin -fstack-protector-strong -o md aver.o cpu_intel.o input.o forces.o main.o mdee.o mdstep.o restart.o scalar.o service.o setup.o util.o mpif77 -Wl,-rpath=/usr/local/lib/gcc10 -L/usr/local/lib/gcc10 -B/usr/local/bin -fstack-protector-strong -o mdp aver.o cpu_mpi.o input.o forces.o main.o mdee.o mdstep.o restart.o mpi.o pimd.o service.o setup.o util.o /usr/local/bin/ld: main.o: in function `MAIN__': main.f:(.text+0x199e): undefined reference to `iunits_' /usr/local/bin/ld: main.f:(.text+0x2e33): undefined reference to `fcc_' /usr/local/bin/ld: main.f:(.text+0x2f23): undefined reference to `dnasol_' /usr/local/bin/ld: main.f:(.text+0x2f32): undefined reference to `sphole_' /usr/local/bin/ld: main.f:(.text+0x2f6f): undefined reference to `cubic_' /usr/local/bin/ld: main.f:(.text+0x446a): undefined reference to `bndlst_' /usr/local/bin/ld: main.f:(.text+0x560a): undefined reference to `pullini_' collect2: error: ld returned 1 exit status make[2]: *** [Makefile.gfortran:10: default] Error 1 make[2]: Leaving directory '/wrkdirs/usr/ports/science/mdynamix/work/md528' gmake[1]: *** [Makefile:2: default] Error 2 gmake[1]: *** Waiting for unfinished jobs.... make[2]: Leaving directory '/wrkdirs/usr/ports/science/mdynamix/work/md528' gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/mdynamix/work/md528' ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make: stopped in /usr/ports/science/mdynamix
Want to link to this message? Use this URL: <https://mail-archive.FreeBSD.org/cgi/mid.cgi?202108312204.17VM4QLY080701>