Date: Sun, 3 Feb 2019 21:14:38 +0000 (UTC) From: Yuri Victorovich <yuri@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r492079 - in head/biology: . figtree Message-ID: <201902032114.x13LEcwK020950@repo.freebsd.org>
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Author: yuri Date: Sun Feb 3 21:14:38 2019 New Revision: 492079 URL: https://svnweb.freebsd.org/changeset/ports/492079 Log: New port: biology/figtree: Graphical viewer of phylogenetic trees Added: head/biology/figtree/ head/biology/figtree/Makefile (contents, props changed) head/biology/figtree/distinfo (contents, props changed) head/biology/figtree/pkg-descr (contents, props changed) Modified: head/biology/Makefile Modified: head/biology/Makefile ============================================================================== --- head/biology/Makefile Sun Feb 3 21:04:24 2019 (r492078) +++ head/biology/Makefile Sun Feb 3 21:14:38 2019 (r492079) @@ -36,6 +36,7 @@ SUBDIR += fastqc SUBDIR += fasttree SUBDIR += fastx-toolkit + SUBDIR += figtree SUBDIR += fluctuate SUBDIR += freebayes SUBDIR += garlic Added: head/biology/figtree/Makefile ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/figtree/Makefile Sun Feb 3 21:14:38 2019 (r492079) @@ -0,0 +1,38 @@ +# $FreeBSD$ + +PORTNAME= figtree +DISTVERSIONPREFIX= v +DISTVERSION= 1.4.4 +CATEGORIES= biology java + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Graphical viewer of phylogenetic trees + +LICENSE= GPLv2 + +USE_JAVA= yes +USE_ANT= yes +USE_GITHUB= yes +GH_ACCOUNT= rambaut + +NO_ARCH= yes + +DESKTOP_ENTRIES="FigTree" "Phylogenetic tree viewer" "${PREFIX}/share/pixmaps/${PORTNAME}.png" "${PORTNAME}" \ + "Biology;Science;Education;" true + +PLIST_FILES= bin/${PORTNAME} \ + ${JAVAJARDIR}/${PORTNAME}-pdf.jar \ + ${JAVAJARDIR}/${PORTNAME}.jar \ + ${JAVAJARDIR}/figtreepanel.jar \ + share/pixmaps/${PORTNAME}.png \ + +do-install: + @(echo "#!/bin/sh"; \ + echo ""; \ + echo ${JAVA} -jar ${JAVAJARDIR}/${PORTNAME}.jar \ + ) > ${STAGEDIR}${PREFIX}/bin/${PORTNAME} + @${CHMOD} +x ${STAGEDIR}${PREFIX}/bin/${PORTNAME} + ${INSTALL_DATA} ${WRKSRC}/dist/*.jar ${STAGEDIR}${JAVAJARDIR} + ${INSTALL_DATA} ${WRKSRC}/release/Linux/icons/${PORTNAME}.png ${STAGEDIR}${PREFIX}/share/pixmaps/${PORTNAME}.png + +.include <bsd.port.mk> Added: head/biology/figtree/distinfo ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/figtree/distinfo Sun Feb 3 21:14:38 2019 (r492079) @@ -0,0 +1,3 @@ +TIMESTAMP = 1549226829 +SHA256 (rambaut-figtree-v1.4.4_GH0.tar.gz) = 29a2e7fb2de0fa213aa0bb3003347fe278c28d8273bbc06f1d98cda9dda35d89 +SIZE (rambaut-figtree-v1.4.4_GH0.tar.gz) = 20994009 Added: head/biology/figtree/pkg-descr ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/figtree/pkg-descr Sun Feb 3 21:14:38 2019 (r492079) @@ -0,0 +1,7 @@ +FigTree is designed as a graphical viewer of phylogenetic trees and as a program +for producing publication-ready figures. As with most of my programs, it was +written for my own needs so may not be as polished and feature-complete as a +commercial program. In particular it is designed to display summarized and +annotated trees produced by BEAST. + +WWW: http://tree.bio.ed.ac.uk/software/figtree/
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