From owner-dev-commits-ports-main@freebsd.org Sun Sep 19 06:48:07 2021 Return-Path: Delivered-To: dev-commits-ports-main@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id 896676ADE29; Sun, 19 Sep 2021 06:48:07 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4HBytv3VlDz3qB8; Sun, 19 Sep 2021 06:48:07 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 54A6418D8D; Sun, 19 Sep 2021 06:48:07 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 18J6m7vJ009071; Sun, 19 Sep 2021 06:48:07 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 18J6m76V009070; Sun, 19 Sep 2021 06:48:07 GMT (envelope-from git) Date: Sun, 19 Sep 2021 06:48:07 GMT Message-Id: <202109190648.18J6m76V009070@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Yuri Victorovich Subject: git: ad2bdb650879 - main - biology/libnuml: New port: C++ library for Numerical Markup Language MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: yuri X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: ad2bdb6508797ea89b8e554df96ebbd08b6835ee Auto-Submitted: auto-generated X-BeenThere: dev-commits-ports-main@freebsd.org X-Mailman-Version: 2.1.34 Precedence: list List-Id: Commits to the main branch of the FreeBSD ports repository List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sun, 19 Sep 2021 06:48:07 -0000 The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=ad2bdb6508797ea89b8e554df96ebbd08b6835ee commit ad2bdb6508797ea89b8e554df96ebbd08b6835ee Author: Yuri Victorovich AuthorDate: 2021-09-19 06:15:20 +0000 Commit: Yuri Victorovich CommitDate: 2021-09-19 06:47:02 +0000 biology/libnuml: New port: C++ library for Numerical Markup Language --- biology/Makefile | 1 + biology/libnuml/Makefile | 26 ++++++++++++++++++++++++++ biology/libnuml/distinfo | 3 +++ biology/libnuml/pkg-descr | 6 ++++++ biology/libnuml/pkg-plist | 44 ++++++++++++++++++++++++++++++++++++++++++++ 5 files changed, 80 insertions(+) diff --git a/biology/Makefile b/biology/Makefile index 294a87ca4e78..e24861f2a317 100644 --- a/biology/Makefile +++ b/biology/Makefile @@ -76,6 +76,7 @@ SUBDIR += lamarc SUBDIR += libbigwig SUBDIR += libgtextutils + SUBDIR += libnuml SUBDIR += libsbml SUBDIR += linux-foldingathome SUBDIR += mafft diff --git a/biology/libnuml/Makefile b/biology/libnuml/Makefile new file mode 100644 index 000000000000..890a2e919ee8 --- /dev/null +++ b/biology/libnuml/Makefile @@ -0,0 +1,26 @@ +PORTNAME= libnuml +DISTVERSIONPREFIX= v +DISTVERSION= 1.1.4 +CATEGORIES= biology devel + +MAINTAINER= yuri@FreeBSD.org +COMMENT= C++ library for Numerical Markup Language + +LICENSE= LGPL21 + +LIB_DEPENDS= libsbml.so:biology/libsbml + +USES= cmake gnome +USE_GNOME= libxml2 +USE_LDCONFIG= yes + +USE_GITHUB= yes +GH_ACCOUNT= NuML +GH_PROJECT= NuML + +WRKSRC_SUBDIR= ${PORTNAME} + +post-install: + @${RM} -r ${STAGEDIR}${DATADIR} + +.include diff --git a/biology/libnuml/distinfo b/biology/libnuml/distinfo new file mode 100644 index 000000000000..6d10a1bca0ea --- /dev/null +++ b/biology/libnuml/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1632027367 +SHA256 (NuML-NuML-v1.1.4_GH0.tar.gz) = 18e8f6d9b0c261f34123bc2e1bd601730993d63fb53f7434b5901b1059aa9109 +SIZE (NuML-NuML-v1.1.4_GH0.tar.gz) = 3419841 diff --git a/biology/libnuml/pkg-descr b/biology/libnuml/pkg-descr new file mode 100644 index 000000000000..011a4793507b --- /dev/null +++ b/biology/libnuml/pkg-descr @@ -0,0 +1,6 @@ +The Numerical Markup Language (NuML) aims to standardize the exchange and +archiving of numerical results. NuML originates from the numerical aspects of +the Systems Biology Results Markup Language (SBRML) with the aim of re-using it +in multiple other standardization efforts. + +WWW: https://github.com/NuML/NuML diff --git a/biology/libnuml/pkg-plist b/biology/libnuml/pkg-plist new file mode 100644 index 000000000000..44b188050119 --- /dev/null +++ b/biology/libnuml/pkg-plist @@ -0,0 +1,44 @@ +include/numl/AtomicDescription.h +include/numl/AtomicValue.h +include/numl/CompositeDescription.h +include/numl/CompositeValue.h +include/numl/Dimension.h +include/numl/DimensionDescription.h +include/numl/NMBase.h +include/numl/NUMLDocument.h +include/numl/NUMLError.h +include/numl/NUMLErrorLog.h +include/numl/NUMLErrorTable.h +include/numl/NUMLList.h +include/numl/NUMLNamespaces.h +include/numl/NUMLReader.h +include/numl/NUMLSimpleTester.h +include/numl/NUMLTypeCodes.h +include/numl/NUMLTypes.h +include/numl/NUMLVisitor.h +include/numl/NUMLWriter.h +include/numl/OntologyTerm.h +include/numl/ResultComponent.h +include/numl/Tuple.h +include/numl/TupleDescription.h +include/numl/common/common.h +include/numl/common/extern.h +include/numl/common/libnuml-config-common.h +include/numl/common/libnuml-config-unix.h +include/numl/common/libnuml-config-win.h +include/numl/common/libnuml-config.h +include/numl/common/libnuml-namespace.h +include/numl/common/libnuml-package.h +include/numl/common/libnuml-version.h +include/numl/common/numlfwd.h +include/numl/common/operationReturnValues.h +lib/cmake/numl-config-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/numl-config-version.cmake +lib/cmake/numl-config.cmake +lib/cmake/numl-static-config-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/numl-static-config-version.cmake +lib/cmake/numl-static-config.cmake +lib/libnuml-static.a +lib/libnuml.so +lib/libnuml.so.1 +lib/libnuml.so.1.1.4