Date: Wed, 26 Feb 2014 01:22:53 GMT From: pkg-fallout-builder@FreeBSD.org To: sunpoet@FreeBSD.org Cc: pkg-fallout@FreeBSD.org Subject: [REL - 10i386-quarterly][science/netcdf4] Failed for netcdf-4.1.3_2 in build Message-ID: <201402260122.s1Q1MrtK014905@beefy1.isc.freebsd.org>
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Maintainer: sunpoet@FreeBSD.org Last committer: sunpoet@FreeBSD.org Ident: $FreeBSD: branches/2014Q1/science/netcdf4/Makefile 336087 2013-12-10 19:17:08Z sunpoet $ Log URL: http://beefy1.isc.freebsd.org/bulk/10i386-quarterly/2014-02-26_01h04m32s/logs/netcdf-4.1.3_2.log Build URL: http://beefy1.isc.freebsd.org/bulk/10i386-quarterly/2014-02-26_01h04m32s Log: ====>> Building science/netcdf4 build started at Wed Feb 26 01:21:53 UTC 2014 port directory: /usr/ports/science/netcdf4 building for: FreeBSD 10i386-quarterly-job-09 10.0-RELEASE FreeBSD 10.0-RELEASE i386 maintained by: sunpoet@FreeBSD.org Makefile ident: $FreeBSD: branches/2014Q1/science/netcdf4/Makefile 336087 2013-12-10 19:17:08Z sunpoet $ Poudriere version: 3.1-pre ---Begin Environment--- UNAME_m=i386 UNAME_p=i386 OSVERSION=1000510 UNAME_v=FreeBSD 10.0-RELEASE UNAME_r=10.0-RELEASE BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 MASTERMNT=/usr/local/poudriere/data/build/10i386-quarterly/ref PKG_EXT=txz tpid=81872 PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNG=1 PKGNAME=netcdf-4.1.3_2 PKG_DELETE=/usr/local/sbin/pkg-static delete -y -f PKG_ADD=/usr/local/sbin/pkg-static add PWD=/root MASTERNAME=10i386-quarterly USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes PKG_VERSION=/poudriere/pkg-static version PKG_BIN=/usr/local/sbin/pkg-static ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for netcdf-4.1.3_2: DAP=off: Build DAP client and remote testing FORTRAN=off: Build library for Fortran SZIP=off: SZIP support (required if HDF5 was built with SZIP) ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --enable-cxx --enable-cxx-4 --enable-netcdf-4 --enable-shared --with-hdf5=/usr/local --with-zlib=/usr --disable-dap --disable-f77 --disable-f90 --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- TMPDIR="/tmp" TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- INFODIR="/usr/local/info" MAKEINFOFLAGS="--no-split" TMPDIR="/tmp" TMPDIR="/tmp" SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing" CPP="cpp" CPPFLAGS="-I/usr/local/include -fPIC -DPIC" LDFLAGS=" -L/usr/local/lib" CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -o root -g wheel -m 555" BSD_INSTALL_LIB="install -s -o root -g wheel -m 444" BSD_INSTALL_SCRIPT="install -o root -g wheel -m 555" BSD_INSTALL_DATA="install -o root -g wheel -m 444" BSD_INSTALL_MAN="install -o root -g wheel -m 444" --End MAKE_ENV-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/netcdf DOCSDIR=/usr/local/share/doc/netcdf EXAMPLESDIR=/usr/local/share/examples/netcdf WWWDIR=/usr/local/www/netcdf ETCDIR=/usr/local/etc/netcdf --End SUB_LIST-- ---Begin make.conf--- ARCH=i386 MACHINE=i386 MACHINE_ARCH=i386 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles #### /usr/local/etc/poudriere.d/make.conf #### WITH_PKGNG=yes NO_RESTRICTED=yes DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ===> Cleaning for netcdf-4.1.3_2 =======================<phase: check-config >============================ =========================================================================== =======================<phase: pkg-depends >============================ ===> netcdf-4.1.3_2 depends on file: /usr/local/sbin/pkg - not found ===> Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg ===> Installing existing package /packages/All/pkg-1.2.6.txz Installing pkg-1.2.6... done If you are upgrading from the old package format, first run: # pkg2ng ===> Returning to build of netcdf-4.1.3_2 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> Fetching all distfiles required by netcdf-4.1.3_2 for building =========================================================================== =======================<phase: checksum >============================ ===> Fetching all distfiles required by netcdf-4.1.3_2 for building => SHA256 Checksum OK for netcdf-4.1.3.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> Fetching all distfiles required by netcdf-4.1.3_2 for building ===> Extracting for netcdf-4.1.3_2 => SHA256 Checksum OK for netcdf-4.1.3.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for netcdf-4.1.3_2 =========================================================================== =======================<phase: build-depends >============================ =========================================================================== =======================<phase: lib-depends >============================ ===> netcdf-4.1.3_2 depends on shared library: hdf5.7 - not found ===> Verifying install for hdf5.7 in /usr/ports/science/hdf5-18 ===> Installing existing package /packages/All/hdf5-18-1.8.10.txz Installing hdf5-18-1.8.10... done ===> Returning to build of netcdf-4.1.3_2 =========================================================================== =======================<phase: configure >============================ ===> Configuring for netcdf-4.1.3_2 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/science/netcdf4/work/netcdf-4.1.3/udunits/aclocal.m4 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/science/netcdf4/work/netcdf-4.1.3/udunits/configure ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/science/netcdf4/work/netcdf-4.1.3/libcf/acinclude.m4 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/science/netcdf4/work/netcdf-4.1.3/libcf/m4/libtool.m4 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/science/netcdf4/work/netcdf-4.1.3/libcf/aclocal.m4 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/science/netcdf4/work/netcdf-4.1.3/libcf/configure ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/science/netcdf4/work/netcdf-4.1.3/acinclude.m4 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/science/netcdf4/work/netcdf-4.1.3/m4/libtool.m4 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/science/netcdf4/work/netcdf-4.1.3/aclocal.m4 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/science/netcdf4/work/netcdf-4.1.3/configure configure: loading site script /usr/ports/Templates/config.site configure: netCDF 4.1.3 checking build system type... i386-portbld-freebsd10.0 checking host system type... i386-portbld-freebsd10.0 checking target system type... i386-portbld-freebsd10.0 checking for a BSD-compatible install... /usr/bin/install -c -o root -g wheel checking whether build environment is sane... yes checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p checking for gawk... (cached) /usr/bin/awk checking whether make sets $(MAKE)... yes configure: checking user options checking whether CXX is set to ''... no checking whether FC is set to ''... no checking whether F90 is set to ''... no checking whether a NCIO_MINBLOCKSIZE was specified... 256 checking whether udunits is to be built... no checking if fsync support is enabled... yes checking whether extra valgrind tests should be run... no checking whether we should try to build netCDF-4... yes checking whether libcf is to be built... no checking whether reading of HDF4 SD files is to be enabled... no checking whether to fetch some sample HDF4 files from Unidata ftp site to test HDF4 reading (requires wget)... no checking whether parallel I/O for classic and 64-bit offset files using parallel-netcdf is to be enabled... no checking whether new netCDF-4 C++ API is to be built... yes checking whether extra example tests should be run... no checking whether parallel IO tests should be run... no checking whether a default chunk size in bytes was specified... 4194304 checking whether a maximum per-variable cache size for HDF5 was specified... 67108864 checking whether a number of chunks for the default per-variable cache was specified... 10 checking whether a default file cache size for HDF5 was specified... 4194304 checking whether a default file cache maximum number of elements for HDF5 was specified... 1009 checking whether a default cache preemption for HDF5 was specified... 0.75 checking whether netCDF-4 logging is enabled... no checking whether cdmremote client is to be built... no checking whether DAP client is to be built... no checking for style of include used by make... GNU checking for gcc... cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking dependency style of cc... gcc3 checking for curl_easy_setopt in -lcurl... no checking whether dap remote testing should be enabled (default on)... no checking whether the time-consuming dap tests should be enabled (default off)... no checking whether netCDF extra tests should be run (developers only)... no checking whether FFIO will be used... no checking whether to skip C++, F77, or F90 APIs if compiler is broken... yes checking whether examples should be built... yes checking whether F77 API is desired... no checking whether any Fortran API is desired... no checking whether F90 API is desired... no checking whether fortran type sizes should be checked... yes checking whether CXX API is desired... yes checking whether v2 netCDF API should be built... yes checking whether the ncgen/ncdump/nccopy should be built... yes checking whether large file (> 2GB) tests should be run... no checking whether benchmaks should be run (experimental)... no <snip> "ncGroup.cpp" ^ ncGroup.cpp:768:86: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] ncCheck(nc_put_att_long(myId,NC_GLOBAL,name.c_str(),type.getId(),len,dataValues),__FILE__,__LINE__); ^ <scratch space>:362:1: note: expanded from here "ncGroup.cpp" ^ ncGroup.cpp:777:81: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] ncCheck(nc_put_att(myId,NC_GLOBAL,name.c_str(),type.getId(),len,dataValues),__FILE__,__LINE__); ^ <scratch space>:362:1: note: expanded from here "ncGroup.cpp" ^ ncGroup.cpp:779:87: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] ncCheck(nc_put_att_float(myId,NC_GLOBAL,name.c_str(),type.getId(),len,dataValues),__FILE__,__LINE__); ^ <scratch space>:362:1: note: expanded from here "ncGroup.cpp" ^ ncGroup.cpp:789:81: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] ncCheck(nc_put_att(myId,NC_GLOBAL,name.c_str(),type.getId(),len,dataValues),__FILE__,__LINE__); ^ <scratch space>:362:1: note: expanded from here "ncGroup.cpp" ^ ncGroup.cpp:791:88: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] ncCheck(nc_put_att_double(myId,NC_GLOBAL,name.c_str(),type.getId(),len,dataValues),__FILE__,__LINE__); ^ <scratch space>:362:1: note: expanded from here "ncGroup.cpp" ^ ncGroup.cpp:801:81: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] ncCheck(nc_put_att(myId,NC_GLOBAL,name.c_str(),type.getId(),len,dataValues),__FILE__,__LINE__); ^ <scratch space>:362:1: note: expanded from here "ncGroup.cpp" ^ ncGroup.cpp:803:88: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] ncCheck(nc_put_att_ushort(myId,NC_GLOBAL,name.c_str(),type.getId(),len,dataValues),__FILE__,__LINE__); ^ <scratch space>:362:1: note: expanded from here "ncGroup.cpp" ^ ncGroup.cpp:812:81: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] ncCheck(nc_put_att(myId,NC_GLOBAL,name.c_str(),type.getId(),len,dataValues),__FILE__,__LINE__); ^ <scratch space>:362:1: note: expanded from here "ncGroup.cpp" ^ ncGroup.cpp:814:86: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] ncCheck(nc_put_att_uint(myId,NC_GLOBAL,name.c_str(),type.getId(),len,dataValues),__FILE__,__LINE__); ^ <scratch space>:362:1: note: expanded from here "ncGroup.cpp" ^ ncGroup.cpp:823:81: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] ncCheck(nc_put_att(myId,NC_GLOBAL,name.c_str(),type.getId(),len,dataValues),__FILE__,__LINE__); ^ <scratch space>:362:1: note: expanded from here "ncGroup.cpp" ^ ncGroup.cpp:825:90: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] ncCheck(nc_put_att_longlong(myId,NC_GLOBAL,name.c_str(),type.getId(),len,dataValues),__FILE__,__LINE__); ^ <scratch space>:362:1: note: expanded from here "ncGroup.cpp" ^ ncGroup.cpp:835:81: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] ncCheck(nc_put_att(myId,NC_GLOBAL,name.c_str(),type.getId(),len,dataValues),__FILE__,__LINE__); ^ <scratch space>:362:1: note: expanded from here "ncGroup.cpp" ^ ncGroup.cpp:837:91: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] ncCheck(nc_put_att_ulonglong(myId,NC_GLOBAL,name.c_str(),type.getId(),len,dataValues),__FILE__,__LINE__); ^ <scratch space>:362:1: note: expanded from here "ncGroup.cpp" ^ ncGroup.cpp:845:73: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] ncCheck(nc_put_att_string(myId,NC_GLOBAL,name.c_str(),len,dataValues),__FILE__,__LINE__); ^ <scratch space>:2:1: note: expanded from here "ncGroup.cpp" ^ ncGroup.cpp:852:79: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] ncCheck(nc_put_att(myId,NC_GLOBAL,name.c_str(),type.getId(),len,dataValues),__FILE__,__LINE__); ^ <scratch space>:3:1: note: expanded from here "ncGroup.cpp" ^ ncGroup.cpp:873:44: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] ncCheck(nc_inq_ndims(getId(), &ndimsp),__FILE__,__LINE__); ^ <scratch space>:3:1: note: expanded from here "ncGroup.cpp" ^ ncGroup.cpp:908:59: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] ncCheck(nc_inq_dimids(getId(),&dimCount,&dimids[0],0),__FILE__,__LINE__); ^ <scratch space>:3:1: note: expanded from here "ncGroup.cpp" ^ ncGroup.cpp:973:56: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] ncCheck(nc_def_dim(myId,name.c_str(),dimSize,&dimId),__FILE__,__LINE__); ^ <scratch space>:3:1: note: expanded from here "ncGroup.cpp" ^ ncGroup.cpp:982:61: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] ncCheck(nc_def_dim(myId,name.c_str(),NC_UNLIMITED,&dimId),__FILE__,__LINE__); ^ <scratch space>:3:1: note: expanded from here "ncGroup.cpp" ^ ncGroup.cpp:1007:56: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] ncCheck(nc_inq_typeids(getId(), &ntypesp,typeidsp),__FILE__,__LINE__); ^ <scratch space>:3:1: note: expanded from here "ncGroup.cpp" ^ ncGroup.cpp:1045:56: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] ncCheck(nc_inq_typeids(getId(), &ntypesp,typeidsp),__FILE__,__LINE__); ^ <scratch space>:3:1: note: expanded from here "ncGroup.cpp" ^ ncGroup.cpp:1047:59: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] ncCheck(nc_inq_typeids(getId(), &ntypesp,&typeids[0]),__FILE__,__LINE__); ^ <scratch space>:3:1: note: expanded from here "ncGroup.cpp" ^ ncGroup.cpp:1085:61: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] ncCheck(nc_inq_typeids(getId(), &typeCount,&typeids[0]),__FILE__,__LINE__); ^ <scratch space>:3:1: note: expanded from here "ncGroup.cpp" ^ ncGroup.cpp:1215:62: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] ncCheck(nc_def_enum(myId, baseType, name.c_str(), &typeId),__FILE__,__LINE__); ^ <scratch space>:3:1: note: expanded from here "ncGroup.cpp" ^ ncGroup.cpp:1224:88: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] ncCheck(nc_def_vlen(myId, const_cast<char*>(name.c_str()),baseType.getId(),&typeId),__FILE__,__LINE__); ^ <scratch space>:3:1: note: expanded from here "ncGroup.cpp" ^ ncGroup.cpp:1233:78: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] ncCheck(nc_def_opaque(myId, size,const_cast<char*>(name.c_str()), &typeId),__FILE__,__LINE__); ^ <scratch space>:3:1: note: expanded from here "ncGroup.cpp" ^ ncGroup.cpp:1241:79: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] ncCheck(nc_def_compound(myId, size,const_cast<char*>(name.c_str()),&typeId),__FILE__,__LINE__); ^ <scratch space>:3:1: note: expanded from here "ncGroup.cpp" ^ ncGroup.cpp:1261:11: error: no viable overloaded '=' itV = varTmp.find(coordName); ~~~ ^ ~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/map:499:24: note: candidate function (the implicit copy assignment operator) not viable: no known conversion from '__map_iterator<__tree_iterator<value_type, __node_pointer, [...]>>' to 'const __map_iterator<__tree_iterator<struct std::__1::map<class std::__1::basic_string<char>, class netCDF::NcVar, struct std::__1::less<class std::__1::basic_string<char> >, class std::__1::allocator<struct std::__1::pair<const class std::__1::basic_string<char>, class netCDF::NcVar> > >::__value_type, class std::__1::__tree_node<struct std::__1::map<class std::__1::basic_string<char>, class netCDF::NcVar, struct std::__1::less<class std::__1::basic_string<char> >, class std::__1::allocator<struct std::__1::pair<const class std::__1::basic_string<char>, class netCDF::NcVar> > >::__value_type, void *> *, [...]>>' for 1st argument class _LIBCPP_TYPE_VIS __map_iterator ^ ncGroup.cpp:1262:14: error: invalid operands to binary expression ('map<string, NcVar>::iterator' (aka '__map_iterator<typename __base::iterator>') and 'iterator' (aka '__map_iterator<typename __base::iterator>')) if(itV != varTmp.end()) { ~~~ ^ ~~~~~~~~~~~~ ncGroup.cpp:1298:8: error: no viable overloaded '=' itV=varTmp.find(coordVarName); ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/v1/map:499:24: note: candidate function (the implicit copy assignment operator) not viable: no known conversion from '__map_iterator<__tree_iterator<value_type, __node_pointer, [...]>>' to 'const __map_iterator<__tree_iterator<struct std::__1::map<class std::__1::basic_string<char>, class netCDF::NcVar, struct std::__1::less<class std::__1::basic_string<char> >, class std::__1::allocator<struct std::__1::pair<const class std::__1::basic_string<char>, class netCDF::NcVar> > >::__value_type, class std::__1::__tree_node<struct std::__1::map<class std::__1::basic_string<char>, class netCDF::NcVar, struct std::__1::less<class std::__1::basic_string<char> >, class std::__1::allocator<struct std::__1::pair<const class std::__1::basic_string<char>, class netCDF::NcVar> > >::__value_type, void *> *, [...]>>' for 1st argument class _LIBCPP_TYPE_VIS __map_iterator ^ ncGroup.cpp:1299:35: error: invalid operands to binary expression ('map<string, NcVar>::iterator' (aka '__map_iterator<typename __base::iterator>') and 'iterator' (aka '__map_iterator<typename __base::iterator>')) if(itD != dimTmp.end() && itV != varTmp.end()) { ~~~ ^ ~~~~~~~~~~~~ 76 warnings and 6 errors generated. *** Error code 1 Stop. make[3]: stopped in /wrkdirs/usr/ports/science/netcdf4/work/netcdf-4.1.3/cxx4 *** Error code 1 Stop. make[2]: stopped in /wrkdirs/usr/ports/science/netcdf4/work/netcdf-4.1.3 *** Error code 1 Stop. make[1]: stopped in /wrkdirs/usr/ports/science/netcdf4/work/netcdf-4.1.3 *** Error code 1 Stop. make: stopped in /usr/ports/science/netcdf4 ===> Cleaning for netcdf-4.1.3_2
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