Date: Sat, 16 May 2020 00:13:09 +0000 (UTC) From: Yuri Victorovich <yuri@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r535339 - in head/biology: . py-ete3 Message-ID: <202005160013.04G0D9IZ012968@repo.freebsd.org>
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Author: yuri Date: Sat May 16 00:13:09 2020 New Revision: 535339 URL: https://svnweb.freebsd.org/changeset/ports/535339 Log: New port: biology/py-ete3: Framework for the analysis and visualization of trees Added: head/biology/py-ete3/ head/biology/py-ete3/Makefile (contents, props changed) head/biology/py-ete3/distinfo (contents, props changed) head/biology/py-ete3/pkg-descr (contents, props changed) Modified: head/biology/Makefile Modified: head/biology/Makefile ============================================================================== --- head/biology/Makefile Fri May 15 22:28:02 2020 (r535338) +++ head/biology/Makefile Sat May 16 00:13:09 2020 (r535339) @@ -125,6 +125,7 @@ SUBDIR += py-bx-python SUBDIR += py-cutadapt SUBDIR += py-dnaio + SUBDIR += py-ete3 SUBDIR += py-fastTSNE SUBDIR += py-gffutils SUBDIR += py-gtfparse Added: head/biology/py-ete3/Makefile ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/py-ete3/Makefile Sat May 16 00:13:09 2020 (r535339) @@ -0,0 +1,28 @@ +# $FreeBSD$ + +PORTNAME= ete3 +DISTVERSION= 3.1.1 +CATEGORIES= biology python +MASTER_SITES= CHEESESHOP +PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Framework for the analysis and visualization of trees + +LICENSE= GPLv3 +LICENSE_FILE= ${WRKSRC}/LICENSE + +PY_DEPENDS= ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}lxml>0:devel/py-lxml@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}six>0:devel/py-six@${PY_FLAVOR} +BUILD_DEPENDS= ${PY_DEPENDS} +RUN_DEPENDS= ${PY_DEPENDS} + +USES= python pyqt:5 shebangfix +SHEBANG_GLOB= *.py +USE_PYTHON= distutils concurrent autoplist +USE_PYQT= core gui opengl printsupport svg widgets + +NO_ARCH= yes + +.include <bsd.port.mk> Added: head/biology/py-ete3/distinfo ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/py-ete3/distinfo Sat May 16 00:13:09 2020 (r535339) @@ -0,0 +1,3 @@ +TIMESTAMP = 1589570291 +SHA256 (ete3-3.1.1.tar.gz) = 870a3d4b496a36fbda4b13c7c6b9dfa7638384539ae93551ec7acb377fb9c385 +SIZE (ete3-3.1.1.tar.gz) = 10504887 Added: head/biology/py-ete3/pkg-descr ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/py-ete3/pkg-descr Sat May 16 00:13:09 2020 (r535339) @@ -0,0 +1,11 @@ +ETE is a Python programming toolkit that assists in the automated manipulation, +analysis and visualization of phylogenetic trees. It provides a wide range of +tree handling options, node annotation features and specialized features to deal +with phylogenetic trees (i.e automatic orthology and paralogy detection, +phylostratigraphy, tree reconciliation, etc). ETE implements also an interactive +tree visualization system based on a a highly customizable tree drawing engine +(PDF and SVG tree images). Although ETE is developed as a tool for phylogenetic +analysis, it is also used to handle other types of hierarchical trees +(i.e. clustering results). + +WWW: http://etetoolkit.org/
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