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Date:      Mon, 23 Aug 2021 12:42:52 GMT
From:      pkg-fallout@FreeBSD.org
To:        pkg-fallout@FreeBSD.org
Subject:   [package - main-armv6-default][biology/ngs-sdk] Failed for ngs-sdk-2.11.1 in build
Message-ID:  <202108231242.17NCgqlM080744@beefy8.nyi.freebsd.org>

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You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     yuri@FreeBSD.org
Log URL:        http://beefy8.nyi.freebsd.org/data/main-armv6-default/pa8720dde236b_seba8e643b1/logs/ngs-sdk-2.11.1.log
Build URL:      http://beefy8.nyi.freebsd.org/build.html?mastername=main-armv6-default&build=pa8720dde236b_seba8e643b1
Log:

=>> Building biology/ngs-sdk
build started at Mon Aug 23 12:42:09 UTC 2021
port directory: /usr/ports/biology/ngs-sdk
package name: ngs-sdk-2.11.1
building for: FreeBSD main-armv6-default-job-16 14.0-CURRENT FreeBSD 14.0-CURRENT 1400030 arm
maintained by: yuri@FreeBSD.org
Makefile ident: 
Poudriere version: 3.2.8-21-g883afb07
Host OSVERSION: 1300121
Jail OSVERSION: 1400030
Job Id: 16




!!! Jail is newer than host. (Jail: 1400030, Host: 1300121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



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MAKE_ARGS=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--

--CONFIGURE_ARGS--
--prefix="/wrkdirs/usr/ports/biology/ngs-sdk/work/stage/usr/local" --build-prefix="/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.1/build"
--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl  PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work  HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ngs-sdk/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work  HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ngs-sdk/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local  LOCALBASE=/usr/local  CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe  -fstack-protector-strong -fno-strict-aliasing "  CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS=""  LDFLAGS=" -fstack-protector-strong " LIBS=""  CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing  "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
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--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/ngs DOCSDIR=/usr/local/share/doc/ngs EXAMPLESDIR=/usr/local/share/examples/ngs  WWWDIR=/usr/local/www/ngs ETCDIR=/usr/local/etc/ngs
--End SUB_LIST--

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ARCH=${MACHINE_ARCH}
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#MASTER_SITE_FREEBSD=yes
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#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_9d218390=FreeBSD clang version 12.0.1 (git@github.com:llvm/llvm-project.git llvmorg-12.0.1-0-gfed41342a82f) Target: armv6-unknown-freebsd14.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin
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open files                      (-n)  1024
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
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kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>  License PD accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   ngs-sdk-2.11.1 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.17.1.pkg
[main-armv6-default-job-16] Installing pkg-1.17.1...
[main-armv6-default-job-16] Extracting pkg-1.17.1: .......... done
===>   ngs-sdk-2.11.1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of ngs-sdk-2.11.1
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License PD accepted by the user
=> ncbi-ngs-2.11.1_GH0.tar.gz doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch https://codeload.github.com/ncbi/ngs/tar.gz/2.11.1?dummy=/ncbi-ngs-2.11.1_GH0.tar.gz
fetch: https://codeload.github.com/ncbi/ngs/tar.gz/2.11.1?dummy=/ncbi-ngs-2.11.1_GH0.tar.gz: size unknown
fetch: https://codeload.github.com/ncbi/ngs/tar.gz/2.11.1?dummy=/ncbi-ngs-2.11.1_GH0.tar.gz: size of remote file is not known
ncbi-ngs-2.11.1_GH0.tar.gz                            1075 kB 3021 kBps    00s
===> Fetching all distfiles required by ngs-sdk-2.11.1 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License PD accepted by the user
===> Fetching all distfiles required by ngs-sdk-2.11.1 for building
=> SHA256 Checksum OK for ncbi-ngs-2.11.1_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License PD accepted by the user
===> Fetching all distfiles required by ngs-sdk-2.11.1 for building
===>  Extracting for ngs-sdk-2.11.1
=> SHA256 Checksum OK for ncbi-ngs-2.11.1_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for ngs-sdk-2.11.1
===>  Applying FreeBSD patches for ngs-sdk-2.11.1 from /usr/ports/biology/ngs-sdk/files
===========================================================================
=======================<phase: build-depends  >============================
===>   ngs-sdk-2.11.1 depends on package: gmake>=4.3 - not found
===>   Installing existing package /packages/All/gmake-4.3_2.pkg
[main-armv6-default-job-16] Installing gmake-4.3_2...
[main-armv6-default-job-16] `-- Installing gettext-runtime-0.21...
[main-armv6-default-job-16] |   `-- Installing indexinfo-0.3.1...
[main-armv6-default-job-16] |   `-- Extracting indexinfo-0.3.1: .... done
[main-armv6-default-job-16] `-- Extracting gettext-runtime-0.21: .......... done
[main-armv6-default-job-16] Extracting gmake-4.3_2: .......... done
===>   ngs-sdk-2.11.1 depends on package: gmake>=4.3 - found
===>   Returning to build of ngs-sdk-2.11.1
===>   ngs-sdk-2.11.1 depends on package: perl5>=5.32.r0<5.33 - not found
===>   Installing existing package /packages/All/perl5-5.32.1_1.pkg
[main-armv6-default-job-16] Installing perl5-5.32.1_1...
[main-armv6-default-job-16] Extracting perl5-5.32.1_1: .......... done
===>   ngs-sdk-2.11.1 depends on package: perl5>=5.32.r0<5.33 - found
===>   Returning to build of ngs-sdk-2.11.1
===========================================================================
=======================<phase: lib-depends    >============================
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for ngs-sdk-2.11.1
CONFIGURING ngs-sdk
Configuring NGS-SDK package
checking system type... FreeBSD
checking machine architecture... arm
configure: error: unsupported architecture 'FreeBSD':'arm'

CONFIGURING ngs-java
Configuring NGS-JAVA package
checking system type... FreeBSD
checking machine architecture... arm
configure: error: unsupported architecture 'FreeBSD':'arm'

CONFIGURING ngs-python
Configuring NGS-PYTHON package
checking system type... FreeBSD
checking machine architecture... arm
configure: error: unsupported architecture 'FreeBSD':'arm'

===========================================================================
=======================<phase: build          >============================
===>  Building for ngs-sdk-2.11.1
gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.1'
gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.1/ngs-sdk'
*** File 'Makefile.config.FreeBSD.arm' is missing. Please run ./configure
gmake[2]: *** [/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.1/ngs-sdk/Makefile.rules:72: Makefile.config.FreeBSD.arm] Error 1
gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.1/ngs-sdk'
gmake[1]: *** [Makefile:54: ngs-sdk] Error 2
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.11.1'
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/ngs-sdk



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