From owner-svn-ports-all@freebsd.org Sun Oct 6 22:18:31 2019 Return-Path: Delivered-To: svn-ports-all@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id E3A74136714; Sun, 6 Oct 2019 22:18:31 +0000 (UTC) (envelope-from jwb@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) server-signature RSA-PSS (4096 bits) client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 46mdKz5g96z3R34; Sun, 6 Oct 2019 22:18:31 +0000 (UTC) (envelope-from jwb@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id A5E474FF8; Sun, 6 Oct 2019 22:18:31 +0000 (UTC) (envelope-from jwb@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id x96MIVrW086175; Sun, 6 Oct 2019 22:18:31 GMT (envelope-from jwb@FreeBSD.org) Received: (from jwb@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id x96MIVLp086174; Sun, 6 Oct 2019 22:18:31 GMT (envelope-from jwb@FreeBSD.org) Message-Id: <201910062218.x96MIVLp086174@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: jwb set sender to jwb@FreeBSD.org using -f From: "Jason W. Bacon" Date: Sun, 6 Oct 2019 22:18:31 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r513915 - head/biology/star X-SVN-Group: ports-head X-SVN-Commit-Author: jwb X-SVN-Commit-Paths: head/biology/star X-SVN-Commit-Revision: 513915 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-all@freebsd.org X-Mailman-Version: 2.1.29 Precedence: list List-Id: SVN commit messages for the ports tree List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sun, 06 Oct 2019 22:18:32 -0000 Author: jwb Date: Sun Oct 6 22:18:31 2019 New Revision: 513915 URL: https://svnweb.freebsd.org/changeset/ports/513915 Log: biology/star: Upgrade to 2.7.2d Fix chimeric output bug. Numerous other minor fixes and enhancements since 2.7.0. Reported by: portscout Modified: head/biology/star/Makefile head/biology/star/distinfo (contents, props changed) Modified: head/biology/star/Makefile ============================================================================== --- head/biology/star/Makefile Sun Oct 6 22:05:36 2019 (r513914) +++ head/biology/star/Makefile Sun Oct 6 22:18:31 2019 (r513915) @@ -1,8 +1,7 @@ # $FreeBSD$ PORTNAME= STAR -DISTVERSION= 2.7.0f -PORTREVISION= 1 +DISTVERSION= 2.7.2d CATEGORIES= biology PKGNAMEPREFIX= rna- @@ -26,7 +25,7 @@ PLIST_FILES= bin/STAR .include # Force newer compiler on platforms using GCC 4.2 as base -.if ${CHOSEN_COMPILER_TYPE} == gcc +.if ${CHOSEN_COMPILER_TYPE} == gcc && ${COMPILER_VERSION} <= 42 USE_GCC= yes .endif Modified: head/biology/star/distinfo ============================================================================== --- head/biology/star/distinfo Sun Oct 6 22:05:36 2019 (r513914) +++ head/biology/star/distinfo Sun Oct 6 22:18:31 2019 (r513915) @@ -1,3 +1,3 @@ -TIMESTAMP = 1555876360 -SHA256 (alexdobin-STAR-2.7.0f_GH0.tar.gz) = daead0a87b259e6311f48f31ccaab5bd53ef1da9d6e5cd7210e0d714b7e23204 -SIZE (alexdobin-STAR-2.7.0f_GH0.tar.gz) = 8061887 +TIMESTAMP = 1570398385 +SHA256 (alexdobin-STAR-2.7.2d_GH0.tar.gz) = 46eba14658082c93d7982c5b5898051c7139f1f9add9390de7c135f587b42ab4 +SIZE (alexdobin-STAR-2.7.2d_GH0.tar.gz) = 8142737