Date: Sun, 8 Dec 2019 16:49:19 +0000 (UTC) From: Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r519318 - in head/biology: . p5-Bio-DB-EMBL Message-ID: <201912081649.xB8GnJP0054096@repo.freebsd.org>
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Author: sunpoet Date: Sun Dec 8 16:49:19 2019 New Revision: 519318 URL: https://svnweb.freebsd.org/changeset/ports/519318 Log: Add p5-Bio-DB-EMBL 1.7.4 Bio::DB::EMBL allows the dynamic retrieval of sequence objects Bio::Seq from the EMBL database using the dbfetch script at EBI. In order to make changes transparent we have host type (currently only ebi) and location (defaults to ebi) separated out. This allows later additions of more servers in different geographical locations. The functionality of this module is inherited from Bio::DB::DBFetch which implements Bio::DB::WebDBSeqI. WWW: https://metacpan.org/release/Bio-DB-EMBL Added: head/biology/p5-Bio-DB-EMBL/ head/biology/p5-Bio-DB-EMBL/Makefile (contents, props changed) head/biology/p5-Bio-DB-EMBL/distinfo (contents, props changed) head/biology/p5-Bio-DB-EMBL/pkg-descr (contents, props changed) head/biology/p5-Bio-DB-EMBL/pkg-plist (contents, props changed) Modified: head/biology/Makefile Modified: head/biology/Makefile ============================================================================== --- head/biology/Makefile Sun Dec 8 16:49:13 2019 (r519317) +++ head/biology/Makefile Sun Dec 8 16:49:19 2019 (r519318) @@ -86,6 +86,7 @@ SUBDIR += p5-Bio-ASN1-EntrezGene SUBDIR += p5-Bio-Cluster SUBDIR += p5-Bio-Coordinate + SUBDIR += p5-Bio-DB-EMBL SUBDIR += p5-Bio-Das SUBDIR += p5-Bio-Das-Lite SUBDIR += p5-Bio-FeatureIO Added: head/biology/p5-Bio-DB-EMBL/Makefile ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/p5-Bio-DB-EMBL/Makefile Sun Dec 8 16:49:19 2019 (r519318) @@ -0,0 +1,27 @@ +# Created by: Po-Chuan Hsieh <sunpoet@FreeBSD.org> +# $FreeBSD$ + +PORTNAME= Bio-DB-EMBL +PORTVERSION= 1.7.4 +CATEGORIES= biology perl5 +MASTER_SITES= CPAN +PKGNAMEPREFIX= p5- + +MAINTAINER= sunpoet@FreeBSD.org +COMMENT= Database object interface for EMBL entry retrieval + +LICENSE= ART10 GPLv1+ +LICENSE_COMB= dual +LICENSE_FILE= ${WRKSRC}/LICENSE + +BUILD_DEPENDS= ${RUN_DEPENDS} +RUN_DEPENDS= p5-BioPerl>=0:biology/p5-BioPerl +TEST_DEPENDS= p5-Test-Most>=0:devel/p5-Test-Most \ + p5-Test-RequiresInternet>=0:devel/p5-Test-RequiresInternet + +USES= perl5 +USE_PERL5= configure + +NO_ARCH= yes + +.include <bsd.port.mk> Added: head/biology/p5-Bio-DB-EMBL/distinfo ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/p5-Bio-DB-EMBL/distinfo Sun Dec 8 16:49:19 2019 (r519318) @@ -0,0 +1,3 @@ +TIMESTAMP = 1575793783 +SHA256 (Bio-DB-EMBL-1.7.4.tar.gz) = fce080c4b3db7bcc529fd0cf0d29700d0b86ef8bbe7f77ad87f429a3ae7e1a27 +SIZE (Bio-DB-EMBL-1.7.4.tar.gz) = 13927 Added: head/biology/p5-Bio-DB-EMBL/pkg-descr ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/p5-Bio-DB-EMBL/pkg-descr Sun Dec 8 16:49:19 2019 (r519318) @@ -0,0 +1,11 @@ +Bio::DB::EMBL allows the dynamic retrieval of sequence objects Bio::Seq from the +EMBL database using the dbfetch script at EBI. + +In order to make changes transparent we have host type (currently only ebi) and +location (defaults to ebi) separated out. This allows later additions of more +servers in different geographical locations. + +The functionality of this module is inherited from Bio::DB::DBFetch which +implements Bio::DB::WebDBSeqI. + +WWW: https://metacpan.org/release/Bio-DB-EMBL Added: head/biology/p5-Bio-DB-EMBL/pkg-plist ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/p5-Bio-DB-EMBL/pkg-plist Sun Dec 8 16:49:19 2019 (r519318) @@ -0,0 +1,2 @@ +%%SITE_PERL%%/Bio/DB/EMBL.pm +%%PERL5_MAN3%%/Bio::DB::EMBL.3.gz
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