From owner-freebsd-ports@FreeBSD.ORG Thu Jan 25 16:25:58 2007 Return-Path: X-Original-To: freebsd-ports@freebsd.org Delivered-To: freebsd-ports@freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [69.147.83.52]) by hub.freebsd.org (Postfix) with ESMTP id 72B0D16A402 for ; Thu, 25 Jan 2007 16:25:58 +0000 (UTC) (envelope-from rpvoland@facstaff.wisc.edu) Received: from smtpauth.wiscmail.wisc.edu (adsum.doit.wisc.edu [144.92.197.210]) by mx1.freebsd.org (Postfix) with ESMTP id 4B1A913C4C3 for ; Thu, 25 Jan 2007 16:25:58 +0000 (UTC) (envelope-from rpvoland@facstaff.wisc.edu) Received: from avs-daemon.smtpauth1.wiscmail.wisc.edu by smtpauth1.wiscmail.wisc.edu (Sun Java System Messaging Server 6.2-7.05 (built Sep 5 2006)) id <0JCF00401K78C800@smtpauth1.wiscmail.wisc.edu> for freebsd-ports@freebsd.org; Thu, 25 Jan 2007 09:25:56 -0600 (CST) Received: from [144.92.71.190] by smtpauth1.wiscmail.wisc.edu (Sun Java System Messaging Server 6.2-7.05 (built Sep 5 2006)) with ESMTPSA id <0JCF00N64K702W10@smtpauth1.wiscmail.wisc.edu>; Thu, 25 Jan 2007 09:25:55 -0600 (CST) Date: Thu, 25 Jan 2007 09:25:47 -0600 From: Rick Voland In-reply-to: <200701241944.53346.vdemart1@tin.it> To: vittorio Message-id: <45B8CBFB.6090001@facstaff.wisc.edu> MIME-version: 1.0 Content-type: text/plain; charset=ISO-8859-1; format=flowed Content-transfer-encoding: 8BIT X-Spam-Report: AuthenticatedSender=yes, SenderIP=144.92.71.190 X-Spam-PmxInfo: Server=avs-11, Version=5.3.0.289146, Antispam-Engine: 2.5.0.283055, Antispam-Data: 2007.1.25.71432, SenderIP=144.92.71.190 References: <20070117.180355.02238085.chat95@mac.com> <20070124.094023.04505493.chat95@mac.com> <20070124.103041.34613013.chat95@mac.com> <200701241944.53346.vdemart1@tin.it> User-Agent: Thunderbird 1.5.0.9 (Windows/20061207) Cc: freebsd-ports@freebsd.org Subject: Re: math/R eats up all. X-BeenThere: freebsd-ports@freebsd.org X-Mailman-Version: 2.1.5 Precedence: list List-Id: Porting software to FreeBSD List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Thu, 25 Jan 2007 16:25:58 -0000 Can anyone else confirm a problem or lack of problem building math/R with the build option for math/atlas using the new gcc42 ? Last night, I rebuilt math/blas and math/atlas successfully using their default settings. I have had no problem with them. Then, I built math/R selecting all the options in the options window (letterpaper, dvi manuals, atlas). I know from previous attempts that math/R builds successfully on this machine using the latest gcc42 with all options except when I select math/atlas. When I delete /var/db/ports/R/options (to reset the options), math/atlas is not automatically selected. math/R built up to the point of starting lapack stuff (right after graphics devices), and then stops building, but R continues to use 100% CPU cycles. I allowed it go for two hours with no more progress. R (without atlas) would complete in maybe 20 minutes. The computer remained responsive, but I had to kill R. math/R built successfully with math/atlas on this computer before the change to gcc42. In my make.conf, I identify the CPU as Pentium-M, but I have no optimization settings in make.conf. Thanks, Rick Voland rpvoland@facstaff.wisc.edu vittorio wrote: > I helped the mantainer to update R to both 2.4.0 and to 2.4.1 (ports/107638, > still waiting to be committed, long overdue). > > I can't understand the point! > On a pentium 4 notebook I hadn't the slightest problem in compiling the latest > R, atlas, blas and lapack. > As a matter of fact R requires 'blas' as a dependency as well as 'atlas'. So > if you compile/update atlas (i did it yesterday!) by default blas should be > compiled and installed. > > I suggest to install the following packages with the default configuration in > this order: > 1) blas > 2) atlas > 3) R > > Let me know.... > > Ciao > Vittorio > > > Alle 01:30, mercoledì 24 gennaio 2007, NAKATA Maho ha scritto: >> Hi, >> >> I recieved some message that we cannot build math/R. >> >> If one use ATLAS instead of BLAS/LAPACK, build of math/R stops at: >>> mkdir ../../../../library/grDevices/libs >> and then hangs with 100% CPU usage. >> >> I don't know how I fix it sorry. >> -- NAKATA, Maho (maho@FreeBSD.org) >> _______________________________________________ >> freebsd-ports@freebsd.org mailing list >> http://lists.freebsd.org/mailman/listinfo/freebsd-ports >> To unsubscribe, send any mail to "freebsd-ports-unsubscribe@freebsd.org" > _______________________________________________ > freebsd-ports@freebsd.org mailing list > http://lists.freebsd.org/mailman/listinfo/freebsd-ports > To unsubscribe, send any mail to "freebsd-ports-unsubscribe@freebsd.org" > -- Rick Voland rpvoland@facstaff.wisc.edu