From owner-svn-ports-all@freebsd.org Sat Feb 6 10:17:33 2016 Return-Path: Delivered-To: svn-ports-all@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 2F22AA9E80C; Sat, 6 Feb 2016 10:17:33 +0000 (UTC) (envelope-from pi@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mx1.freebsd.org (Postfix) with ESMTPS id 02A6011E; Sat, 6 Feb 2016 10:17:32 +0000 (UTC) (envelope-from pi@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id u16AHWjl089202; Sat, 6 Feb 2016 10:17:32 GMT (envelope-from pi@FreeBSD.org) Received: (from pi@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id u16AHVB7089200; Sat, 6 Feb 2016 10:17:31 GMT (envelope-from pi@FreeBSD.org) Message-Id: <201602061017.u16AHVB7089200@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: pi set sender to pi@FreeBSD.org using -f From: Kurt Jaeger Date: Sat, 6 Feb 2016 10:17:31 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r408287 - head/biology/seqtools X-SVN-Group: ports-head MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-all@freebsd.org X-Mailman-Version: 2.1.20 Precedence: list List-Id: SVN commit messages for the ports tree List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sat, 06 Feb 2016 10:17:33 -0000 Author: pi Date: Sat Feb 6 10:17:31 2016 New Revision: 408287 URL: https://svnweb.freebsd.org/changeset/ports/408287 Log: biology/seqtools: 4.39.3 -> 4.40.0 - Blixem can now accept a 'command' tag in a gff line for a region feature. The given command should return gff and will be run by blixem on the given region. - Blixem now supports fetching sequence data over https. Modified: head/biology/seqtools/Makefile head/biology/seqtools/distinfo Modified: head/biology/seqtools/Makefile ============================================================================== --- head/biology/seqtools/Makefile Sat Feb 6 09:29:57 2016 (r408286) +++ head/biology/seqtools/Makefile Sat Feb 6 10:17:31 2016 (r408287) @@ -1,7 +1,7 @@ # $FreeBSD$ PORTNAME= seqtools -PORTVERSION= 4.39.3 +PORTVERSION= 4.40.0 CATEGORIES= biology MASTER_SITES= ftp://ftp.sanger.ac.uk/pub4/resources/software/seqtools/PRODUCTION/ Modified: head/biology/seqtools/distinfo ============================================================================== --- head/biology/seqtools/distinfo Sat Feb 6 09:29:57 2016 (r408286) +++ head/biology/seqtools/distinfo Sat Feb 6 10:17:31 2016 (r408287) @@ -1,2 +1,2 @@ -SHA256 (seqtools-4.39.3.tar.gz) = 1aa911754ae104d797f64ec1b04c8ff20cb314120b877b46e8c8652454534c8d -SIZE (seqtools-4.39.3.tar.gz) = 5603380 +SHA256 (seqtools-4.40.0.tar.gz) = ccffe22309174fc6b2d93e77ebd503bff21427fdbc92fd6a361264f0ac6f2cab +SIZE (seqtools-4.40.0.tar.gz) = 5608178