Date: Wed, 6 Jan 2021 09:02:07 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - 121arm64-quarterly][science/qmcpack] Failed for qmcpack-3.10.0 in configure Message-ID: <202101060902.1069272A021532@ampere1.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Last committer: yuri@FreeBSD.org Ident: $FreeBSD: branches/2021Q1/science/qmcpack/Makefile 555002 2020-11-13 05:10:06Z yuri $ Log URL: http://ampere1.nyi.freebsd.org/data/121arm64-quarterly/560365/logs/qmcpack-3.10.0.log Build URL: http://ampere1.nyi.freebsd.org/build.html?mastername=121arm64-quarterly&build=560365 Log: =>> Building science/qmcpack build started at Wed Jan 6 09:01:23 UTC 2021 port directory: /usr/ports/science/qmcpack package name: qmcpack-3.10.0 building for: FreeBSD 121arm64-quarterly-job-07 12.1-RELEASE FreeBSD 12.1-RELEASE arm64 maintained by: yuri@FreeBSD.org Makefile ident: $FreeBSD: branches/2021Q1/science/qmcpack/Makefile 555002 2020-11-13 05:10:06Z yuri $ Poudriere version: 3.2.8-8-gaf08dbda Host OSVERSION: 1300121 Jail OSVERSION: 1201000 Job Id: 07 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1201000 UNAME_v=FreeBSD 12.1-RELEASE UNAME_r=12.1-RELEASE BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root 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USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 8.0.1 (tags/RELEASE_801/final 366581) (based on LLVM 8.0.1) Target: aarch64-unknown-freebsd12.1 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 8.0.1 (tags/RELEASE_801/final 366581) (based on LLVM 8.0.1) Target: aarch64-unknown-freebsd12.1 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 8.0.1 (tags/RELEASE_801/final 366581) (based on LLVM 8.0.1) Target: aarch64-unknown-freebsd12.1 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=aarch64 OPSYS=FreeBSD _OSRELEASE=12.1-RELEASE OSREL=12.1 OSVERSION=1201000 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 1048576 stack size (kbytes, -s) 1048576 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License BSD3CLAUSE accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> qmcpack-3.10.0 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.16.1.txz [121arm64-quarterly-job-07] Installing pkg-1.16.1... [121arm64-quarterly-job-07] Extracting pkg-1.16.1: .......... done ===> qmcpack-3.10.0 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of qmcpack-3.10.0 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License BSD3CLAUSE accepted by the user => QMCPACK-qmcpack-v3.10.0_GH0.tar.gz doesn't seem to exist in /portdistfiles/. => Attempting to fetch https://codeload.github.com/QMCPACK/qmcpack/tar.gz/v3.10.0?dummy=/QMCPACK-qmcpack-v3.10.0_GH0.tar.gz fetch: https://codeload.github.com/QMCPACK/qmcpack/tar.gz/v3.10.0?dummy=/QMCPACK-qmcpack-v3.10.0_GH0.tar.gz: size unknown fetch: https://codeload.github.com/QMCPACK/qmcpack/tar.gz/v3.10.0?dummy=/QMCPACK-qmcpack-v3.10.0_GH0.tar.gz: size of remote file is not known QMCPACK-qmcpack-v3.10.0_GH0.tar.gz 101 MB 7163 kBps 14s ===> Fetching all distfiles required by qmcpack-3.10.0 for building =========================================================================== =======================<phase: checksum >============================ ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by qmcpack-3.10.0 for building => SHA256 Checksum OK for QMCPACK-qmcpack-v3.10.0_GH0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by qmcpack-3.10.0 for building ===> Extracting for qmcpack-3.10.0 => SHA256 Checksum OK for QMCPACK-qmcpack-v3.10.0_GH0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for qmcpack-3.10.0 ===> Applying FreeBSD patches for qmcpack-3.10.0 from /usr/ports/science/qmcpack/files =========================================================================== =======================<phase: build-depends >============================ ===> qmcpack-3.10.0 depends on package: catch>0 - not found ===> Installing existing package /packages/All/catch-2.13.3.txz [121arm64-quarterly-job-07] Installing catch-2.13.3... [121arm64-quarterly-job-07] Extracting catch-2.13.3: .......... done ===> qmcpack-3.10.0 depends on package: catch>0 - found ===> Returning to build of qmcpack-3.10.0 ===> qmcpack-3.10.0 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-3.19.2.txz [121arm64-quarterly-job-07] Installing cmake-3.19.2... [121arm64-quarterly-job-07] `-- Installing curl-7.74.0... [121arm64-quarterly-job-07] | `-- Installing ca_root_nss-3.58... [121arm64-quarterly-job-07] | `-- Extracting ca_root_nss-3.58: ........ done [121arm64-quarterly-job-07] | `-- Installing libnghttp2-1.42.0... [121arm64-quarterly-job-07] | `-- Extracting libnghttp2-1.42.0: .......... done [121arm64-quarterly-job-07] `-- Extracting curl-7.74.0: .......... done [121arm64-quarterly-job-07] `-- Installing expat-2.2.10... <snip> [121arm64-quarterly-job-07] `-- Extracting readline-8.0.4: .......... done [121arm64-quarterly-job-07] Extracting python37-3.7.9_1: .......... done ===== Message from python37-3.7.9_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py37-gdbm databases/py-gdbm@py37 py37-sqlite3 databases/py-sqlite3@py37 py37-tkinter x11-toolkits/py-tkinter@py37 ===> qmcpack-3.10.0 depends on file: /usr/local/bin/python3.7 - found ===> Returning to build of qmcpack-3.10.0 ===> qmcpack-3.10.0 depends on file: /usr/local/bin/as - found =========================================================================== =======================<phase: lib-depends >============================ ===> qmcpack-3.10.0 depends on shared library: libboost_system.so - not found ===> Installing existing package /packages/All/boost-libs-1.72.0_3.txz [121arm64-quarterly-job-07] Installing boost-libs-1.72.0_3... [121arm64-quarterly-job-07] `-- Installing icu-68.2,1... [121arm64-quarterly-job-07] `-- Extracting icu-68.2,1: .......... done [121arm64-quarterly-job-07] Extracting boost-libs-1.72.0_3: .......... done ===== Message from boost-libs-1.72.0_3: -- You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. ===> qmcpack-3.10.0 depends on shared library: libboost_system.so - found (/usr/local/lib/libboost_system.so) ===> Returning to build of qmcpack-3.10.0 ===> qmcpack-3.10.0 depends on shared library: libfftw3.so - not found ===> Installing existing package /packages/All/fftw3-3.3.9.txz [121arm64-quarterly-job-07] Installing fftw3-3.3.9... [121arm64-quarterly-job-07] Extracting fftw3-3.3.9: .......... done ===> qmcpack-3.10.0 depends on shared library: libfftw3.so - found (/usr/local/lib/libfftw3.so) ===> Returning to build of qmcpack-3.10.0 ===> qmcpack-3.10.0 depends on shared library: libhdf5.so - not found ===> Installing existing package /packages/All/hdf5-1.10.6,1.txz [121arm64-quarterly-job-07] Installing hdf5-1.10.6,1... [121arm64-quarterly-job-07] `-- Installing hdf-szip-2.1.1... [121arm64-quarterly-job-07] `-- Extracting hdf-szip-2.1.1: .......... done [121arm64-quarterly-job-07] Extracting hdf5-1.10.6,1: .......... done ===> qmcpack-3.10.0 depends on shared library: libhdf5.so - found (/usr/local/lib/libhdf5.so) ===> Returning to build of qmcpack-3.10.0 ===> qmcpack-3.10.0 depends on shared library: libmpich.so - not found ===> Installing existing package /packages/All/mpich-3.2.1_6.txz [121arm64-quarterly-job-07] Installing mpich-3.2.1_6... [121arm64-quarterly-job-07] `-- Installing hwloc-1.11.13... [121arm64-quarterly-job-07] | `-- Installing libpciaccess-0.16... [121arm64-quarterly-job-07] | | `-- Installing pciids-20201127... [121arm64-quarterly-job-07] | | `-- Extracting pciids-20201127: ..... done [121arm64-quarterly-job-07] | `-- Extracting libpciaccess-0.16: ......... done [121arm64-quarterly-job-07] | `-- Installing libxml2-2.9.10_2... [121arm64-quarterly-job-07] | `-- Extracting libxml2-2.9.10_2: .......... done [121arm64-quarterly-job-07] `-- Extracting hwloc-1.11.13: .......... done [121arm64-quarterly-job-07] `-- Installing perl5-5.32.0_1... [121arm64-quarterly-job-07] `-- Extracting perl5-5.32.0_1: .......... done [121arm64-quarterly-job-07] Extracting mpich-3.2.1_6: .......... done ===== Message from mpich-3.2.1_6: -- ===> NOTICE: The mpich port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> qmcpack-3.10.0 depends on shared library: libmpich.so - found (/usr/local/lib/libmpich.so) ===> Returning to build of qmcpack-3.10.0 ===> qmcpack-3.10.0 depends on shared library: libopenblas.so - not found ===> Installing existing package /packages/All/openblas-0.3.12,1.txz [121arm64-quarterly-job-07] Installing openblas-0.3.12,1... [121arm64-quarterly-job-07] Extracting openblas-0.3.12,1: .......... done ===> qmcpack-3.10.0 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so) ===> Returning to build of qmcpack-3.10.0 ===> qmcpack-3.10.0 depends on shared library: libsz.so - found (/usr/local/lib/libsz.so) ===> qmcpack-3.10.0 depends on shared library: libxml2.so - found (/usr/local/lib/libxml2.so) =========================================================================== =======================<phase: configure >============================ ===> Configuring for qmcpack-3.10.0 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/science/qmcpack/work/.build -- The C compiler identification is Clang 8.0.1 -- The CXX compiler identification is Clang 8.0.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Python3: /usr/local/bin/python3.7 (found version "3.7.9") found components: Interpreter env: python3: No such file or directory -- Unable to import PySCF python module. PySCF tests will not be run. -- QMC_SYMLINK_TEST_FILES = ON. Using symbolic links for large test files may cause test failures if the build is installed on a separate filesystem from the source. For example, Titan at OLCF. -- CMAKE_BUILD_TYPE is RELEASE -- defining the float point precision Base precision = double Full precision = double -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for dlfcn.h -- Looking for dlfcn.h - found -- Looking for inttypes.h -- Looking for inttypes.h - found -- Looking for memory.h -- Looking for memory.h - found -- Looking for sys/stat.h -- Looking for sys/stat.h - found -- Looking for sys/time.h -- Looking for sys/time.h - found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for unistd.h -- Looking for unistd.h - found -- Could NOT find Git (missing: GIT_EXECUTABLE) -- Trying to figure out ..... -- Compiler: Clang -- libstdc++/C++ compiler version compatibility check failed CMake Error at CMake/Testlibstdc++.cmake:30 (message): Change Dir: /wrkdirs/usr/ports/science/qmcpack/work/.build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/make cmTC_de148/fast && /usr/bin/make -f CMakeFiles/cmTC_de148.dir/build.make CMakeFiles/cmTC_de148.dir/build Building CXX object CMakeFiles/cmTC_de148.dir/try_libstdcxx.cpp.o /usr/bin/c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -I/usr/local/include/catch2 -isystem /usr/local/include -fopenmp -fstrict-aliasing -D__forceinline=inline -Wvla -Wall -Wno-unused-variable -Wno-overloaded-virtual -Wno-unused-private-field -Wno-unused-local-typedef -Wno-unknown-pragmas -mcpu=native -std=c++14 -o CMakeFiles/cmTC_de148.dir/try_libstdcxx.cpp.o -c /wrkdirs/usr/ports/science/qmcpack/work/.build/CMakeFiles/CMakeTmp/try_libstdcxx.cpp Linking CXX executable cmTC_de148 /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cmTC_de148.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -I/usr/local/include/catch2 -isystem /usr/local/include -fopenmp -fstrict-aliasing -D__forceinline=inline -Wvla -Wall -Wno-unused-variable -Wno-overloaded-virtual -Wno-unused-private-field -Wno-unused-local-typedef -Wno-unknown-pragmas -mcpu=native -Wl,-rpath=/usr/local/lib/gcc9 -L/usr/local/lib/gcc9 -B/usr/local/bin -fstack-protector-strong -L/usr/local/lib CMakeFiles/cmTC_de148.dir/try_libstdcxx.cpp.o -o cmTC_de148 /usr/local/bin/ld: cannot find -lomp c++: error: linker command failed with exit code 1 (use -v to see invocation) *** Error code 1 Stop. make[2]: stopped in /wrkdirs/usr/ports/science/qmcpack/work/.build/CMakeFiles/CMakeTmp *** Error code 1 Stop. make[1]: stopped in /wrkdirs/usr/ports/science/qmcpack/work/.build/CMakeFiles/CMakeTmp Call Stack (most recent call first): CMakeLists.txt:412 (include) -- Configuring incomplete, errors occurred! See also "/wrkdirs/usr/ports/science/qmcpack/work/.build/CMakeFiles/CMakeOutput.log". *** Error code 1 Stop. make: stopped in /usr/ports/science/qmcpack
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