From nobody Tue Mar 10 23:04:43 2026 X-Original-To: dev-commits-ports-main@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4fVqG41kWcz6VHZ2 for ; Tue, 10 Mar 2026 23:04:44 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R12" (not verified)) by mx1.freebsd.org (Postfix) with ESMTPS id 4fVqG36fLKz3ktM for ; Tue, 10 Mar 2026 23:04:43 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1773183883; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=kgNEg92Fogoka3dVoBbdEcGac9vU780PdMOeoWfoDoQ=; b=cw4r2NeqTy2LoaNI6n3qCYlWj32sd4GqMp0/6juFPb1xosluUiMNa6M2+oG1LvSZJt1LGS o8tvjk5jACQYl6xoFULkUJYpWcSowuQbyAlazQ3PeMgeUHMsY5ltz/D7haFCUeeMP/xrii tg/izI99mKmvoRiMNJrdKJCk4S2B+XpQWTzgQ8HIvM0jweiSV9rbJbFp0iZvwAi5QDUlWO E4+lYr5OcgiUWTCyekvvZql35jLXTv5cgxYJJ0Gv8DmHoZUNi36opEYm2yNA33cfzEWIva yYkhywb+wzc3gjp3Gnz7nSVUbzlsND+mcoANSiHDU6fKgNysKOg4ES3nDYCDpw== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1773183883; a=rsa-sha256; cv=none; b=wSh0qzOAiPYqsRcTYjQAGk4lBhEgMycFd0coulik0TIEf9U5jrnQdq0zpUStC9Dj+VZMHD A5BetcuKZd4zY8Awu0K1GqPbGX4sUB3trw7CC/YNYJIu0HEEBBOtUZlyb8m5GRru+UMF8Q Sja5f0ZL6MDqmnkfwqrOiCECNskrplHeeDa0OIIT9481VIWFVhzADWwNxxox37fZojxo4z QOUqVy44Fk4xYnWva9QCjVuw9Cnu/jYJVAWL+I9wGBwccf/ckIsDd1Y7fy3CGOBHaNTfjV /v9MU/HA6LJF5d40ykwSTS9K3ZZPi5m4Wth7pH13oqPswg3h41s9IclB6rnUxg== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1773183883; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=kgNEg92Fogoka3dVoBbdEcGac9vU780PdMOeoWfoDoQ=; b=bftRvXgcjb591FUksTw7wVeu9d8lcLy2m26PoOWahPu7iB3WlNUVTnBjoX0LcugKF+h0dY pHPSc9/eGW4zKgEgN7L4Jm3PwWjMEBcriIoCN0E7auKUzU+ncyqyU5S5sYi7tfhEQfw5/w 07P6NNAFENi/RfYWsLdeXcOTMm9ZA0GevQbVQQnVJSe+F31DQl255tt59t/jRsXp5zL35s LFpxMic4mhtS4cwmgqavkmwCGeevgYpk6CiDTG+EThZ0afn2Q6chx8N6h0OnJR6fZDYzPC 9lXNL5L2rtJZYrgPnCDzLu6eRIIvFZvNf9MSc7rByqmDJ//PaAdu/vwnX73W2A== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) by mxrelay.nyi.freebsd.org (Postfix) with ESMTP id 4fVqG35PWTzZ7T for ; Tue, 10 Mar 2026 23:04:43 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from git (uid 1279) (envelope-from git@FreeBSD.org) id 42fbf by gitrepo.freebsd.org (DragonFly Mail Agent v0.13+ on gitrepo.freebsd.org); Tue, 10 Mar 2026 23:04:43 +0000 To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Jason W. Bacon Subject: git: faadb5898d64 - main - biology/salmon: Unbreak: Relax libgff version requirement List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: X-BeenThere: dev-commits-ports-main@freebsd.org Sender: owner-dev-commits-ports-main@FreeBSD.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: faadb5898d6485975074edef381765678edd700f Auto-Submitted: auto-generated Date: Tue, 10 Mar 2026 23:04:43 +0000 Message-Id: <69b0a38b.42fbf.442aa8f8@gitrepo.freebsd.org> The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=faadb5898d6485975074edef381765678edd700f commit faadb5898d6485975074edef381765678edd700f Author: Jason W. Bacon AuthorDate: 2026-03-10 23:03:35 +0000 Commit: Jason W. Bacon CommitDate: 2026-03-10 23:03:35 +0000 biology/salmon: Unbreak: Relax libgff version requirement Also drop unnecessary libboost dep Reported by: pkg-fallout --- biology/salmon/Makefile | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/biology/salmon/Makefile b/biology/salmon/Makefile index 7097ee7a77df..c4f91d79f8d1 100644 --- a/biology/salmon/Makefile +++ b/biology/salmon/Makefile @@ -1,7 +1,7 @@ PORTNAME= salmon DISTVERSIONPREFIX= v DISTVERSION= 1.10.3 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org @@ -17,15 +17,14 @@ NOT_FOR_ARCHS_REASON= Requires 64-bit processor # libtool and auto* are run manually in submodules, so don't put them in USES BUILD_DEPENDS= bash:shells/bash \ cereal>=1.3.0:devel/cereal \ - libgff==2.0.0:biology/libgff \ + libgff>=2.0.0:biology/libgff \ libtool:devel/libtool \ autoreconf:devel/autoconf \ aclocal:devel/automake \ eigen>0:math/eigen3 \ libdivide>0:math/libdivide \ curl>0:ftp/curl -LIB_DEPENDS= libtbb.so:devel/onetbb \ - libboost_thread.so:devel/boost-libs +LIB_DEPENDS= libtbb.so:devel/onetbb USES= cmake:noninja gmake localbase shebangfix USE_GITHUB= yes @@ -46,6 +45,7 @@ CMAKE_ARGS+= -DHAVE_FAST_MALLOC:BOOL=on \ -DFETCHED_PUFFERFISH:BOOL=on \ -DFETCHED_LIBGFF:BOOL=on \ -DFETCH_STADEN:BOOL=true +WITH_DEBUG= yes CXXFLAGS+= -I${LOCALBASE}/include/eigen3 LDFLAGS+= -lpthread