Date: Wed, 26 Feb 2014 13:45:42 GMT From: pkg-fallout-builder@FreeBSD.org To: maho@FreeBSD.org Cc: pkg-fallout@FreeBSD.org Subject: [REL - 83amd64-default][science/mpqc-mpich] Failed for mpqc-mpich-2.3.1_17 in build Message-ID: <201402261345.s1QDjg6m070360@beefy2.isc.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: maho@FreeBSD.org Last committer: mat@FreeBSD.org Ident: $FreeBSD: head/science/mpqc-mpich/Makefile 340722 2014-01-22 17:00:46Z mat $ Log URL: http://beefy2.isc.freebsd.org/bulk/83amd64-default/2014-02-26_04h39m00s/logs/mpqc-mpich-2.3.1_17.log Build URL: http://beefy2.isc.freebsd.org/bulk/83amd64-default/2014-02-26_04h39m00s Log: ====>> Building science/mpqc-mpich build started at Wed Feb 26 13:27:46 UTC 2014 port directory: /usr/ports/science/mpqc-mpich building for: FreeBSD 83amd64-default-job-21 8.3-RELEASE-p14 FreeBSD 8.3-RELEASE-p14 amd64 maintained by: maho@FreeBSD.org Makefile ident: $FreeBSD: head/science/mpqc-mpich/Makefile 340722 2014-01-22 17:00:46Z mat $ Poudriere version: 3.1-pre ---Begin Environment--- OSVERSION=803000 UNAME_v=FreeBSD 8.3-RELEASE-p14 UNAME_r=8.3-RELEASE-p14 FTP_PASSIVE_MODE=YES BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 MASTERMNT=/usr/local/poudriere/data/build/83amd64-default/ref PKG_EXT=txz tpid=13192 PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNG=1 PKGNAME=mpqc-mpich-2.3.1_17 PKG_DELETE=/usr/local/sbin/pkg-static delete -y -f PKG_ADD=/usr/local/sbin/pkg-static add PWD=/root MASTERNAME=83amd64-default USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes PKG_VERSION=/poudriere/pkg-static version PKG_BIN=/usr/local/sbin/pkg-static ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for mpqc-mpich-2.3.1_17: DOCS=on: Build and/or install documentation ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --with-cc=cc --with-cxx=c++ --with-f77=gfortran46 --with-libdirs=-L/usr/local/lib --with-blas="-lblas" --with-lapack="-llapack" --with-coptflags="-O2 -pipe -fno-strict-aliasing" --with-cxxoptflags="-O2 -pipe -fno-strict-aliasing" --with-f77optflags="-O -Wl,-rpath=/usr/local/lib/gcc46" --enable-shared --with-sc-datadir=/usr/local/share/mpqc/2.3.1 --with-libdirs="-L/usr/local/lib -L/usr/local/lib" --enable-always-use-mpi --with-include="-I/usr/local/include -I/wrkdirs/usr/ports/science/mpqc-mpich/work -I/usr/local/include" --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- TMPDIR="/tmp" F77="gfortran46" FC="gfortran46" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc46" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc46" MAKE=gmake PTHREAD_LIBS="-pthread" TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" AUTOCONF=/usr/local/bin/autoconf-2.69 AUTOCONF_DIR=/usr/local/share/autoconf-2.69 AUTOHEADER=/usr/local/bin/autoheader-2.69 AUTOIFNAMES=/usr/local/bin/ifnames-2.69 AUTOM4TE=/usr/local/bin/autom4te-2.69 AUTORECONF=/usr/local/bin/autoreconf-2.69 AUTOSCAN=/usr/local/bin/autoscan-2.69 AUTOUPDATE=/usr/local/bin/autoupdate-2.69 AUTOCONF_VERSION=2.69 CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- TMPDIR="/tmp" F77="gfortran46" FC="gfortran46" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc46" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc46" TMPDIR="/tmp" SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" AUTOCONF=/usr/local/bin/autoconf-2.69 AUTOCONF_DIR=/usr/local/share/autoconf-2.69 AUTOHEADER=/usr/local/bin/autoheader-2.69 AUTOIFNAMES=/usr/local/bin/ifnames-2.69 AUTOM4TE=/usr/local/bin/autom4te-2.69 AUTORECONF=/usr/local/bin/autoreconf-2.69 AUTOSCAN=/usr/local/bin/autoscan-2.69 AUTOUPDATE=/usr/local/bin/autoupdate-2.69 AUTOCONF_VERSION=2.69 PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -f no-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc46 -L/usr/local/lib/gcc46" CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -o root -g wheel -m 555" BSD_INSTALL_LIB="install -s -o root -g wheel -m 444" BSD_INSTALL_SCRIPT="install -o root -g wheel -m 555" BSD_INSTALL_DATA="install -o root -g wheel -m 444" BSD_INSTALL_MAN="install -o root -g wheel -m 444" --End MAKE_ENV-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/mpqc DOCSDIR=/usr/local/share/doc/mpqc EXAMPLESDIR=/usr/local/share/examples/mpqc WWWDIR=/usr/local/www/mpqc ETCDIR=/usr/local/etc/mpqc --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles #### /usr/local/etc/poudriere.d/make.conf #### WITH_PKGNG=yes NO_RESTRICTED=yes DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ===> Cleaning for mpqc-mpich-2.3.1_17 =======================<phase: check-config >============================ =========================================================================== =======================<phase: pkg-depends >============================ ===> mpqc-mpich-2.3.1_17 depends on file: /usr/local/sbin/pkg - not found ===> Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg ===> Installing existing package /packages/All/pkg-1.2.6.txz Installing pkg-1.2.6... done If you are upgrading from the old package format, first run: # pkg2ng ===> Returning to build of mpqc-mpich-2.3.1_17 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> Fetching all distfiles required by mpqc-mpich-2.3.1_17 for building =========================================================================== =======================<phase: checksum >============================ ===> Fetching all distfiles required by mpqc-mpich-2.3.1_17 for building => SHA256 Checksum OK for mpqc-2.3.1.tar.bz2. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> Fetching all distfiles required by mpqc-mpich-2.3.1_17 for building ===> Extracting for mpqc-mpich-2.3.1_17 => SHA256 Checksum OK for mpqc-2.3.1.tar.bz2. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for mpqc-mpich-2.3.1_17 ===> Applying FreeBSD patches for mpqc-mpich-2.3.1_17 =========================================================================== =======================<phase: build-depends >============================ ===> mpqc-mpich-2.3.1_17 depends on executable: gfortran46 - not found ===> Verifying install for gfortran46 in /usr/ports/lang/gcc ===> Installing existing package /packages/All/gcc-4.6.4.txz Installing gcc-4.6.4...Installing binutils-2.24...Installing gettext-0.18.3.1...Installing libiconv-1.14_1... done done done Installing gcc-ecj-4.5... done Installing gmp-5.1.3... done Installing mpc-1.0.2...Installing mpfr-3.1.2... done done done ===> Returning to build of mpqc-mpich-2.3.1_17 ===> mpqc-mpich-2.3.1_17 depends on executable: gmake - not found ===> Verifying install for gmake in /usr/ports/devel/gmake ===> Installing existing package /packages/All/gmake-3.82_1.txz Installing gmake-3.82_1... done ===> Returning to build of mpqc-mpich-2.3.1_17 ===> mpqc-mpich-2.3.1_17 depends on executable: doxygen - not found ===> Verifying install for doxygen in /usr/ports/devel/doxygen ===> Installing existing package /packages/All/doxygen-1.8.3.1_1.txz Installing doxygen-1.8.3.1_1...Installing perl5-5.16.3_7... done Installing png-1.5.18... done done ===> Returning to build of mpqc-mpich-2.3.1_17 ===> mpqc-mpich-2.3.1_17 depends on executable: dot - not found ===> Verifying install for dot in /usr/ports/graphics/graphviz ===> Installing existing package /packages/All/graphviz-2.36.0.txz Installing graphviz-2.36.0...Installing expat-2.1.0... done Installing fontconfig-2.11.0_1,1...Installing freetype2-2.5.2... done Running fc-cache to build fontconfig cache... /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: caching, new cache contents: 0 fonts, 1 dirs /usr/local/lib/X11/fonts/local: caching, new cache contents: 0 fonts, 0 dirs /root/.local/share/fonts: skipping, no such directory /root/.fonts: skipping, no such directory /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: caching, new cache contents: 0 fonts, 1 dirs /root/.local/share/fonts: skipping, no such directory /root/.fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory /root/.cache/fontconfig: not cleaning non-existent cache directory /root/.fontconfig: not cleaning non-existent cache directory fc-cache: succeeded done Installing glib-2.36.3_2...Installing libffi-3.0.13_1... done Installing pcre-8.34... done Installing python27-2.7.6_2... done No schema files found: doing nothing. done Installing jpeg-8_4... done Installing libICE-1.0.8,1...Installing xproto-7.0.25... done done Installing libSM-1.2.2,1... done Installing libX11-1.6.2,1...Installing kbproto-1.0.6... done Installing libXau-1.0.8... done Installing libXdmcp-1.1.1... done Installing libpthread-stubs-0.3_4... done Installing libxcb-1.9.3...Installing libxml2-2.8.0_3... done done done Installing libXaw-1.0.12,2...Installing libXext-1.3.2,1...Installing xextproto-7.2.1... done done Installing libXmu-1.1.2,1...Installing libXt-1.1.4,1... done done Installing libXp-1.0.2,1...Installing printproto-1.0.5... done done Installing libXpm-3.5.11... done done Installing libXrender-0.9.8...Installing renderproto-0.11.1... done done Installing libgd-2.1.0_1,1...Installing tiff-4.0.3...Installing freeglut-2.8.1...Installing libGLU-9.0.0...Installing libGL-7.6.1_4...Installing dri2proto-2.8... done Installing libXdamage-1.1.4...Installing damageproto-1.2.1... done Installing fixesproto-5.0... done Installing libXfixes-5.0.1... done done Installing libXxf86vm-1.1.3...Installing xf86vidmodeproto-2.3.1... done done Installing libdrm-2.4.17_1...Installing libpciaccess-0.13.2...Installing pciids-20140222... done done done done done Installing libXi-1.7.2,1...Installing inputproto-2.3... done done Installing libXrandr-1.4.2...Installing randrproto-1.4.0... done done done <snip> Generating docs for compound sc::ProcMemoryGrp... Generating docs for compound sc::RDMAMemoryGrp... Generating docs for compound sc::ShmMemoryGrp... Generating docs for compound sc::GrpReduce... Generating docs for compound sc::GrpSumReduce... Generating docs for compound sc::GrpMinReduce... Generating docs for compound sc::GrpMaxReduce... Generating docs for compound sc::GrpArithmeticAndReduce... Generating docs for compound sc::GrpArithmeticOrReduce... Generating docs for compound sc::GrpArithmeticXOrReduce... Generating docs for compound sc::GrpProductReduce... Generating docs for compound sc::GrpFunctionReduce... Generating docs for compound sc::MessageGrp... Generating docs for compound sc::message_struct... Generating docs for compound sc::ProcMessageGrp... Generating docs for compound sc::intMessageGrp... Generating docs for compound sc::MPIMessageGrp... Generating docs for compound sc::commbuf_struct... Generating docs for compound sc::msgbuf_struct... Generating docs for compound sc::ShmMessageGrp... Generating docs for compound sc::MsgStateSend... Generating docs for compound sc::MsgStateBufRecv... Generating docs for compound sc::MsgStateRecv... Generating docs for compound sc::StateSend... Generating docs for compound sc::StateRecv... Generating docs for compound sc::BcastStateSend... Generating docs for compound sc::BcastStateRecv... Generating docs for compound sc::BcastState... Generating docs for compound sc::BcastStateInBin... Generating docs for compound sc::FreeData... Generating docs for compound sc::UsedData... Generating docs for compound sc::PoolData... Generating docs for compound sc::Pool... Generating docs for compound sc::ParallelRegionTimer... Generating docs for compound sc::RangeLockItem... Generating docs for compound sc::RangeLock... Generating docs for compound sc::PthreadThreadGrp... Generating docs for compound sc::PumaThreadGrp... Generating docs for compound sc::ThreadLock... Generating docs for compound sc::ThreadLockHolder... Generating docs for compound sc::Thread... Generating docs for compound sc::ThreadGrp... Generating docs for compound sc::ProcThreadGrp... Generating docs for compound sc::GlobalMsgIter... Generating docs for compound sc::MachineTopology... Generating docs for compound sc::intlist_struct... Generating docs for compound sc::ip_keyword_tree_struct... Generating docs for compound sc::ip_keyword_tree_list_struct... Generating docs for compound sc::ip_cwk_stack_struct... Generating docs for compound sc::IPV2... Generating docs for compound sc::ip_string_list_struct... Generating docs for compound sc::KeyVal... Generating docs for compound sc::AssignedKeyVal... Generating docs for compound sc::StringKeyVal... Generating docs for compound sc::AggregateKeyVal... Generating docs for compound sc::PrefixKeyVal... Generating docs for compound sc::ParsedKlatex: not found Problems running latex. Check your installation or look for typos in _formulas.tex and check _formulas.log! dvips: not found Problems running dvips. Check your installation! Fatal error 'mutex is on list' at line 427 in file /usr/src/lib/libthr/thread/thr_mutex.c (errno = 0) eyVal... Generating docs for compound sc::KeyValValue... Generating docs for compound sc::KeyValValuedouble... Generating docs for compound sc::KeyValValueboolean... Generating docs for compound sc::KeyValValuefloat... Generating docs for compound sc::KeyValValuechar... Generating docs for compound sc::KeyValValueint... Generating docs for compound sc::KeyValValuesize... Generating docs for compound sc::KeyValValuepchar... Generating docs for compound sc::KeyValValuestring... Generating docs for compound sc::KeyValValueRefDescribedClass... Generating docs for compound sc::KeyValValueString... Generating docs for compound sc::auto_vec... Generating docs for compound sc::Debugger... Generating docs for compound sc::CCAEnv... Generating docs for compound sc::Result... Generating docs for compound sc::NCResult... Generating docs for compound sc::AccResult... Generating docs for compound sc::SSAccResult... Generating docs for compound sc::NCAccResult... Generating docs for compound sc::Compute... Generating docs for compound sc::ResultInfo... Generating docs for compound sc::AccResultInfo... Generating docs for compound sc::ExEnv... Generating docs for compound sc::SCFormIO... Generating docs for compound sc::scprintf... Generating docs for compound sc::TimedRegion... Generating docs for compound sc::RegionTimer... Generating docs for compound sc::Timer... Generating docs for compound sc::Units... Generating docs for compound sc::GetLongOpt... Generating docs for compound sc::Identifier... Generating docs for compound sc::Identity... Generating docs for compound sc::RefCount... Generating docs for compound sc::RefBase... Generating docs for compound sc::Ref... Generating docs for compound sc::X... Generating docs for compound sc::Y... Generating docs for compound sc::vec2... Generating docs for compound sc::vec3... Generating docs for compound sc::vec4... Generating docs for compound sc::mat3... Generating docs for compound sc::mat4... Generating docs for compound sc::AnimatedObject... Generating docs for compound sc::Appearance... Generating docs for compound sc::Color... Generating docs for compound sc::Material... Generating docs for compound sc::RenderedObject... Generating docs for compound sc::RenderedObjectSet... Generating docs for compound sc::OOGLRender... Generating docs for compound sc::Parameter... Generating docs for compound sc::RenderedPolygons... Generating docs for compound sc::RenderedPolylines... Generating docs for compound sc::Render... Generating docs for compound sc::FileRender... Generating docs for compound sc::RenderedSphere... Generating docs for compound sc::Stack... Generating docs for compound sc::Transform... Generating docs for compound sc::SavableStateProxy... Generating docs for compound sc::SavableState... Generating docs for compound sc::StateOutBin... Generating docs for compound sc::StateInBin... Generating docs for compound sc::StateOutFile... Generating docs for compound sc::StateInFile... Generating docs for compound sc::StateOutText... Generating docs for compound sc::StateInText... Generating docs for compound sc::StateInData... Generating docs for compound sc::StateClassData... Generating docs for compound sc::StateIn... Generating docs for compound sc::StateOutData... Generating docs for compound sc::StateOut... Generating docs for compound sc::TranslateData... Generating docs for compound sc::TranslateDataByteSwap... Generating docs for compound sc::TranslateDataOut... Generating docs for compound sc::TranslateDataIn... Generating graph info page... Generating directory documentation... Generating dependency graph for directory basis Generating dependency graph for directory bin Generating dependency graph for directory cca Generating dependency graph for directory chemistry Generating dependency graph for directory cints Generating dependency graph for directory class Generating dependency graph for directory container Generating dependency graph for directory dft Generating dependency graph for directory group Generating dependency graph for directory intcca Generating dependency graph for directory intv3 Generating dependency graph for directory isosurf Generating dependency graph for directory keyval Generating dependency graph for directory lib Generating dependency graph for directory libpsio Generating dependency graph for directory math Generating dependency graph for directory mbpt Generating dependency graph for directory mbptr12 Generating dependency graph for directory misc Generating dependency graph for directory molecule Generating dependency graph for directory molrender Generating dependency graph for directory mpqc Generating dependency graph for directory oint3 Generating dependency graph for directory optimize Generating dependency graph for directory options Generating dependency graph for directory psi Generating dependency graph for directory psi3 Generating dependency graph for directory qc Generating dependency graph for directory ref Generating dependency graph for directory render Generating dependency graph for directory scf Generating dependency graph for directory scls Generating dependency graph for directory scmat Generating dependency graph for directory scpr Generating dependency graph for directory solvent Generating dependency graph for directory src Generating dependency graph for directory state Generating dependency graph for directory symmetry Generating dependency graph for directory util Generating dependency graph for directory wfn Generating bitmaps for formulas in HTML... Generating image form_0.png for formula Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating graphical class hierarchy... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... Generating dot graphs using 25 parallel threads... gmake: *** [html] Abort trap: 6 (core dumped) *** Error code 2 Stop in /usr/ports/science/mpqc-mpich. ===> Cleaning for mpqc-mpich-2.3.1_17
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