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ESMTPS id 4ZPG8913kzzdy9; Fri, 28 Mar 2025 09:54:17 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.18.1/8.18.1) with ESMTP id 52S9sHg6090438; Fri, 28 Mar 2025 09:54:17 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.18.1/8.18.1/Submit) id 52S9sHA6090435; Fri, 28 Mar 2025 09:54:17 GMT (envelope-from git) Date: Fri, 28 Mar 2025 09:54:17 GMT Message-Id: <202503280954.52S9sHA6090435@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Yuri Victorovich Subject: git: a63cf26b66a1 - main - =?utf-8?Q?biology/{,py-}libnuml: update 1.1.6 =E2=86=92 1.1.7?= List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: X-BeenThere: dev-commits-ports-main@freebsd.org Sender: owner-dev-commits-ports-main@FreeBSD.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: yuri X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: a63cf26b66a19348451bd6a92a65f73811242cce Auto-Submitted: auto-generated The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=a63cf26b66a19348451bd6a92a65f73811242cce commit a63cf26b66a19348451bd6a92a65f73811242cce Author: Yuri Victorovich AuthorDate: 2025-03-28 09:53:25 +0000 Commit: Yuri Victorovich CommitDate: 2025-03-28 09:54:11 +0000 biology/{,py-}libnuml: update 1.1.6 → 1.1.7 Reported by: portscout --- biology/libnuml/Makefile | 2 +- biology/libnuml/distinfo | 6 +++--- biology/libnuml/files/patch-CMakeLists.txt | 20 ++++++++++++++++++++ biology/libnuml/pkg-plist | 8 +++++--- biology/py-libnuml/Makefile | 2 +- biology/py-libnuml/distinfo | 6 +++--- biology/py-libnuml/files/patch-CMakeLists.txt | 13 ++----------- 7 files changed, 35 insertions(+), 22 deletions(-) diff --git a/biology/libnuml/Makefile b/biology/libnuml/Makefile index 67dd0f9f954d..b978d8f8bc4d 100644 --- a/biology/libnuml/Makefile +++ b/biology/libnuml/Makefile @@ -1,6 +1,6 @@ PORTNAME= libnuml DISTVERSIONPREFIX= v -DISTVERSION= 1.1.6 +DISTVERSION= 1.1.7 CATEGORIES= biology devel MAINTAINER= yuri@FreeBSD.org diff --git a/biology/libnuml/distinfo b/biology/libnuml/distinfo index d0f2a6d8ab88..cdbf18b2647d 100644 --- a/biology/libnuml/distinfo +++ b/biology/libnuml/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1650763295 -SHA256 (NuML-NuML-v1.1.6_GH0.tar.gz) = 1b51cd51bfe7e9c4e0bcd69f86d8199a23ebe9ea931d4f112b3f6e1666e4f2c8 -SIZE (NuML-NuML-v1.1.6_GH0.tar.gz) = 3425639 +TIMESTAMP = 1743154013 +SHA256 (NuML-NuML-v1.1.7_GH0.tar.gz) = 820d854355d80a3fe6dbe6c5428c45d42542541213cf0c3b3aee705f8ba1399f +SIZE (NuML-NuML-v1.1.7_GH0.tar.gz) = 3427204 diff --git a/biology/libnuml/files/patch-CMakeLists.txt b/biology/libnuml/files/patch-CMakeLists.txt new file mode 100644 index 000000000000..a640f0e1dbe4 --- /dev/null +++ b/biology/libnuml/files/patch-CMakeLists.txt @@ -0,0 +1,20 @@ +- https://github.com/NuML/NuML/issues/31 + +--- CMakeLists.txt.orig 2025-03-28 09:30:46 UTC ++++ CMakeLists.txt +@@ -48,7 +48,7 @@ project(libnuml VERSION "${LIBNUML_VERSION_MAJOR}.${LI + endif() + + project(libnuml VERSION "${LIBNUML_VERSION_MAJOR}.${LIBNUML_VERSION_MINOR}.${LIBNUML_VERSION_PATCH}" +- LANGUAGES CXX) ++ LANGUAGES CXX C) + + include (CMakeTestCXXCompiler) + include (CheckCSourceCompiles) +@@ -757,4 +757,4 @@ message(STATUS " + endif() + + message(STATUS " +-----------------------------------------------------------------------") +\ No newline at end of file ++----------------------------------------------------------------------") diff --git a/biology/libnuml/pkg-plist b/biology/libnuml/pkg-plist index ffd50b651e2a..b0945d0ea32f 100644 --- a/biology/libnuml/pkg-plist +++ b/biology/libnuml/pkg-plist @@ -32,13 +32,15 @@ include/numl/common/libnuml-package.h include/numl/common/libnuml-version.h include/numl/common/numlfwd.h include/numl/common/operationReturnValues.h -lib/cmake/numl-config-%%CMAKE_BUILD_TYPE%%.cmake lib/cmake/numl-config-version.cmake lib/cmake/numl-config.cmake -lib/cmake/numl-static-config-%%CMAKE_BUILD_TYPE%%.cmake lib/cmake/numl-static-config-version.cmake lib/cmake/numl-static-config.cmake +lib/cmake/numl-static-targets-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/numl-static-targets.cmake +lib/cmake/numl-targets-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/numl-targets.cmake lib/libnuml-static.a lib/libnuml.so lib/libnuml.so.1 -lib/libnuml.so.1.1.6 +lib/libnuml.so.1.1.7 diff --git a/biology/py-libnuml/Makefile b/biology/py-libnuml/Makefile index 6a4099d85b9d..2fdbfbff139b 100644 --- a/biology/py-libnuml/Makefile +++ b/biology/py-libnuml/Makefile @@ -1,6 +1,6 @@ PORTNAME= libnuml DISTVERSIONPREFIX= v -DISTVERSION= 1.1.6 +DISTVERSION= 1.1.7 CATEGORIES= biology devel PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} diff --git a/biology/py-libnuml/distinfo b/biology/py-libnuml/distinfo index 61a6a4501c0a..634cc0d9e6ae 100644 --- a/biology/py-libnuml/distinfo +++ b/biology/py-libnuml/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1650763370 -SHA256 (NuML-NuML-v1.1.6_GH0.tar.gz) = 1b51cd51bfe7e9c4e0bcd69f86d8199a23ebe9ea931d4f112b3f6e1666e4f2c8 -SIZE (NuML-NuML-v1.1.6_GH0.tar.gz) = 3425639 +TIMESTAMP = 1743153975 +SHA256 (NuML-NuML-v1.1.7_GH0.tar.gz) = 820d854355d80a3fe6dbe6c5428c45d42542541213cf0c3b3aee705f8ba1399f +SIZE (NuML-NuML-v1.1.7_GH0.tar.gz) = 3427204 diff --git a/biology/py-libnuml/files/patch-CMakeLists.txt b/biology/py-libnuml/files/patch-CMakeLists.txt index 7cd3ba0fcbb4..6d3a58e0a9a4 100644 --- a/biology/py-libnuml/files/patch-CMakeLists.txt +++ b/biology/py-libnuml/files/patch-CMakeLists.txt @@ -1,19 +1,10 @@ ---- CMakeLists.txt.orig 2022-04-19 08:09:02 UTC +--- CMakeLists.txt.orig 2025-03-28 09:49:26 UTC +++ CMakeLists.txt -@@ -53,7 +53,7 @@ if (LIBNUML_REMOVE_WRAPPERS) - endif(LIBNUML_REMOVE_WRAPPERS) - - --set(SWIG_EXTRA_FLAGS -DSWIGEXPORT -DLIBSBML_CPP_NAMESPACE_BEGIN -DLIBSBML_CPP_NAMESPACE_END -DLIBSBML_CPP_NAMESPACE_QUALIFIER -DLIBSBML_CPP_NAMESPACE_USE) -+set(SWIG_EXTRA_FLAGS -DSWIGEXPORT -DLIBSBML_CPP_NAMESPACE_BEGIN= -DLIBSBML_CPP_NAMESPACE_END= -DLIBSBML_CPP_NAMESPACE_QUALIFIER= -DLIBSBML_CPP_NAMESPACE_USE=) - if(NOT UNIX) - set(SWIG_EXTRA_FLAGS ${SWIG_EXTRA_FLAGS} -DSWIGWIN -DSWIG_CSHARP_NO_WSTRING_HELPER ) - endif() @@ -62,6 +62,7 @@ ADD_CUSTOM_COMMAND( OUTPUT ${CMAKE_CURRENT_BINARY_DIR}/libnuml_wrap.cpp COMMAND "${SWIG_EXECUTABLE}" ARGS -I${CMAKE_CURRENT_SOURCE_DIR}/../swig/ -+ -I${CMAKE_INSTALL_PREFIX}/include ++ -I${CMAKE_INSTALL_PREFIX}/include -I${CMAKE_SOURCE_DIR}/ -I${CMAKE_BINARY_DIR}/ -I${CMAKE_BINARY_DIR}/src