From nobody Fri Jan 21 16:16:02 2022 X-Original-To: dev-commits-ports-all@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 192DA196D580; Fri, 21 Jan 2022 16:16:03 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4JgPcz020pz3GMc; Fri, 21 Jan 2022 16:16:03 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1642781763; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=DvImwlMJmNSl0eYxtA1ht4YuLm0xe/4dShxAYg15TT0=; b=KpGyXMlSi8NKiDItSbYXpYSjNHLAk5O/SCEioWJThdSTqVfiEmwcTGJtggdn0xNbyN9oMc wIN+hAhxlRutvk3aaB5nKzbrrAszS5aw5IY6wDiQ+SqSeENNS5aBlqgzq8z3YevWvB8H11 3PrqlUfd+M4Ikr/6w60KofYQj1HZIKBK/7n9buUi8cAg5TjDa8T7xzHw8rwzKZ7ueVNxrz 07Awu6QGvHFQnfKvzvmDH7EjQNX6XjoT9D6lY73HA0zqdrpPB/lYUAIzjJsz3Xd1r+WeHG FrGtLKmGU+Rs7eBJIsCbcFXLvuWToWE80FKIhuKVEVFflhhk5uvNAz+4yrTIxg== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id D201A1EA51; Fri, 21 Jan 2022 16:16:02 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 20LGG2xp008793; Fri, 21 Jan 2022 16:16:02 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 20LGG2gK008792; Fri, 21 Jan 2022 16:16:02 GMT (envelope-from git) Date: Fri, 21 Jan 2022 16:16:02 GMT Message-Id: <202201211616.20LGG2gK008792@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: 265238ee6c37 - main - biology/fastp: Add USE_GCC to hack around seg faults List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-all@freebsd.org X-BeenThere: dev-commits-ports-all@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 265238ee6c37a6abc5ad035a20d91f505d125394 Auto-Submitted: auto-generated ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1642781763; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=DvImwlMJmNSl0eYxtA1ht4YuLm0xe/4dShxAYg15TT0=; b=UTFTmuJ0ES1VoadrBIdNS8tDxi6wLrGB5OaLaq2NKYvodEbLg1W+MAU/LYzI4Su6mTgUX2 QA86JiGycoknIZrH/qQwPOb2+QBF0TqJWyoBAru6vmbnHgg5pP74JXu5txoirsUSroudrC rkdIOKpYwAODbIBK4FKqKHjwVrTs6giaXTWSwCOYvg7KxjeIVoFObLbB4/0/7nzw+6BesP etilPQyMraBwH72KqjY4k6YIC+R6mVQILO3VmuZdWisXsRUDp1REO1ZXQejOEr8rRnJjxL 2A3B9z+j0PO+9lbCPoDC60WVpt8M2WS0hRUNLqoUq2/w5miUW52XkAKcsmBtrA== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1642781763; a=rsa-sha256; cv=none; b=vKRPsplnGDYwtc1NyPTqqh2AKk+9To5SiviIVcKF1REPwBjfmMwu9Tb0bp90Pk8ilKbtxC zCIvEUNLKJKfMNlz/2MyfaDRPBl5ckxyB138i56JODGennvQRwIq8HyETT/pvAIGr9B+sN +XuomzgjY+SI1R1Rl7aTQtyu1qiCz+xaf5lMEX2iBR020vl+LupQRI6f6SGIsx15Ej6Tnp +rkEYKqxC9yyQN1f3l1oq+WXlzlHP9gakPyHons00Zx07lBrmm91zszwBy6zny3ohIzMuk 7yFFz7rOFFs4dHweekDjjoRhja7EBUcSLJ+mSg6OfhAv+8Oem6DRrxRZ8kHMTA== ARC-Authentication-Results: i=1; mx1.freebsd.org; none X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=265238ee6c37a6abc5ad035a20d91f505d125394 commit 265238ee6c37a6abc5ad035a20d91f505d125394 Author: Jason W. Bacon AuthorDate: 2022-01-21 16:14:16 +0000 Commit: Jason W. Bacon CommitDate: 2022-01-21 16:16:01 +0000 biology/fastp: Add USE_GCC to hack around seg faults Upstream has numerous open issues, so it's uncertain if or when the issue with clang will be resolved. --- biology/fastp/Makefile | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/biology/fastp/Makefile b/biology/fastp/Makefile index 38bc8dc5bfb9..5f43ff6a80df 100644 --- a/biology/fastp/Makefile +++ b/biology/fastp/Makefile @@ -1,6 +1,7 @@ PORTNAME= fastp DISTVERSIONPREFIX= v DISTVERSION= 0.23.2 +PORTREVISION= 1 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org @@ -12,8 +13,9 @@ LICENSE_FILE= ${WRKSRC}/LICENSE LIB_DEPENDS= libdeflate.so:archivers/libdeflate \ libisal.so:devel/isa-l -USES= compiler:c++11-lang gmake localbase:ldflags +USES= gmake localbase:ldflags USE_GITHUB= yes +USE_GCC= yes GH_ACCOUNT= OpenGene