From owner-freebsd-ports@FreeBSD.ORG Tue May 14 11:18:26 2013 Return-Path: Delivered-To: freebsd-ports@freebsd.org Received: from mx1.freebsd.org (mx1.FreeBSD.org [8.8.178.115]) by hub.freebsd.org (Postfix) with ESMTP id 58331BB6; Tue, 14 May 2013 11:18:26 +0000 (UTC) (envelope-from carmel_ny@hotmail.com) Received: from blu0-omc3-s1.blu0.hotmail.com (blu0-omc3-s1.blu0.hotmail.com [65.55.116.76]) by mx1.freebsd.org (Postfix) with ESMTP id 1DB73259; Tue, 14 May 2013 11:18:25 +0000 (UTC) Received: from BLU0-SMTP296 ([65.55.116.74]) by blu0-omc3-s1.blu0.hotmail.com with Microsoft SMTPSVC(6.0.3790.4675); Tue, 14 May 2013 04:17:18 -0700 X-EIP: [ECD8DsBNlbL+siy0oL60Puiamqo0DcXu] X-Originating-Email: [carmel_ny@hotmail.com] Message-ID: Received: from scorpio.seibercom.net ([76.182.104.150]) by BLU0-SMTP296.phx.gbl over TLS secured channel with Microsoft SMTPSVC(6.0.3790.4675); Tue, 14 May 2013 04:17:18 -0700 Received: from scorpio (localhost [127.0.0.1]) (using TLSv1.2 with cipher DHE-RSA-AES128-SHA (128/128 bits)) (No client certificate requested) (Authenticated sender: carmel_ny@seibercom.net) by scorpio.seibercom.net (Postfix) with ESMTPSA id 3b8xF906K2z2CG5l; Tue, 14 May 2013 07:17:16 -0400 (EDT) Date: Tue, 14 May 2013 07:17:16 -0400 From: Carmel To: freebsd-ports@freebsd.org, ports@FreeBSD.org Subject: science/avogadro fails to build X-Mailer: Claws Mail 3.9.1 (GTK+ 2.24.17; amd64-portbld-freebsd8.3) Face: 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 MIME-Version: 1.0 Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable X-OriginalArrivalTime: 14 May 2013 11:17:18.0564 (UTC) FILETIME=[98958240:01CE5094] X-BeenThere: freebsd-ports@freebsd.org X-Mailman-Version: 2.1.14 Precedence: list Reply-To: freebsd-ports@freebsd.org List-Id: Porting software to FreeBSD List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Tue, 14 May 2013 11:18:26 -0000 FreeBSD-8.3 STABLE amd64 Evidently=2C the "science/avogadro" port does not have a full time maintainer. In that case=2C I will report the problem here. Basically=2C the port refused to build. It ends with this output: (it probably suffers severe line wrap distortion) cd /usr/ports/science/avogadro/work/avogadro-1.1.0/libavogadro/src/extensio= ns/crystallography && /usr/bin/c++ -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -O2 -pipe -march=3Dathlon64 -idirafter /usr/local/include -fno-strict-aliasing -fvisibility=3Dhidden -fvisibility-inlines-hidden -fpermissive -O2 -pipe -march=3Dathlon64 -idirafter /usr/local/include -fno-strict-aliasing -fPIC -I/usr/ports/science/avogadro/work/avogadro-1.1.0/libavogadro/include -I/usr/local/include/qt4 -I/usr/local/include/qt4/QtOpenGL -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtCore -I/usr/ports/science/avogadro/work/avogadro-1.1.0/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/ports/science/avogadro/work/avogadro-1.1.0/libavogadro/src/extension= s -I/usr/ports/science/avogadro/work/avogadro-1.1.0/libavogadro/src/extension= s/gl2ps -I/usr/ports/science/avogadro/work/avogadro-1.1.0/libavogadro/src/extension= s/crystallography -o CMakeFiles/crystallographyextension.dir/ui/moc_ceviewoptionswidget.cxx.o -c /usr/ports/science/avogadro/work/avogadro-1.1.0/libavogadro/src/extensio= ns/crystallography/ui/moc_ceviewoptionswidget.cxx Linking CXX shared module ../../../../lib/crystallographyextension.so cd /usr/ports/science/avogadro/work/avogadro-1.1.0/libavogadro/src/extensio= ns/crystallography && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/crystallographyextension.dir/link.txt --verbose=3D1 /usr/bin/c++ -fPIC -O2 -pipe -march=3Dathlon64 -idirafter /usr/local/include -fno-strict-aliasing -fvisibility=3Dhidden -fvisibility-inlines-hidden -fpermissive -O2 -pipe -march=3Dathlon64 -idirafter /usr/local/include -fno-strict-aliasing -L/usr/local/lib -shared -Wl=2C-soname=2Ccrystallographyextension.so -o ../../../../lib/crystallographyextension.so CMakeFiles/crystallographyextension.dir/avospglib.cpp.o CMakeFiles/crystallographyextension.dir/ceundo.cpp.o CMakeFiles/crystallographyextension.dir/crystallographyextension.cpp.o CMakeFiles/crystallographyextension.dir/crystalpastedialog.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceabstractdockwidget.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceabstracteditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/cecoordinateeditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/cematrixeditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceparametereditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceslabbuilder.cpp.o CMakeFiles/crystallographyextension.dir/ui/cetranslatewidget.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceviewoptionswidget.cpp.o CMakeFiles/crystallographyextension.dir/moc_crystallographyextension.cxx.o CMakeFiles/crystallographyextension.dir/moc_crystalpastedialog.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstractdockwidget.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstracteditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_cecoordinateeditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_cematrixeditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceparametereditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceslabbuilder.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_cetranslatewidget.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceviewoptionswidget.cxx.o -L/usr/local/lib ../../../../lib/libavogadro.so.1.1.0 /usr/local/lib/qt4/li= bQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel /usr/local/lib/libGLU.so /usr/local/lib/libGL.so /usr/local/lib= /libSM.so /usr/local/lib/libICE.so /usr/local/lib/libX11.so /usr/local/lib/= libXext.so spglib/libspglib.a -Wl=2C-rpath=2C/usr/ports/science/avogadro/work/avogadro-1.1.0/lib:/usr/loc= al/lib:/usr/local/lib/qt4: /usr/bin/ld: spglib/libspglib.a(spglib.c.o): relocation R_X86_64_32 can not be used when making a shared object=3B recompile with -fPIC spglib/libspglib.a: could not read symbols: Bad value *** Error code 1 1 error *** Error code 2 /usr/local/bin/cmake -E cmake_progress_report /usr/ports/science/avogadro/work/avogadro-1.1.0/CMake= Files [ 65%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/uv.cpp.o cd /usr/ports/science/avogadro/work/avogadro-1.1.0/libavogadro/src/extensio= ns/spectra && /usr/bin/c++ -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -O2 -pipe -march=3Dathlon64 -idirafter /usr/local/include -fno-strict-aliasing -fvisibility=3Dhidden -fvisibility-inlines-hidden -fpermissive -O2 -pipe -march=3Dathlon64 -idirafter /usr/local/include -fno-strict-aliasing -fPIC -I/usr/ports/science/avogadro/work/avogadro-1.1.0/libavogadro/include -I/usr/local/include/qt4 -I/usr/local/include/qt4/QtOpenGL -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtCore -I/usr/ports/science/avogadro/work/avogadro-1.1.0/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/ports/science/avogadro/work/avogadro-1.1.0/libavogadro/src/extension= s -I/usr/ports/science/avogadro/work/avogadro-1.1.0/libavogadro/src/extension= s/gl2ps -I/usr/ports/science/avogadro/work/avogadro-1.1.0/libavogadro/src/extension= s/spectra -o CMakeFiles/spectraextension.dir/uv.cpp.o -c /usr/ports/science/avogadro/work/avogadro-1.1.0/libavogadro/src/extensio= ns/spectra/uv.cpp Linking CXX shared module ../../../../lib/spectraextension.so cd /usr/ports/science/avogadro/work/avogadro-1.1.0/libavogadro/src/extensio= ns/spectra && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/spectraextension.dir/link.txt --verbose=3D1 /usr/bin/c++ -fPIC -O2 -pipe -march=3Dathlon64 -idirafter /usr/local/include -fno-strict-aliasing -fvisibility=3Dhidden -fvisibility-inlines-hidden -fpermissive -O2 -pipe -march=3Dathlon64 -idirafter /usr/local/include -fno-strict-aliasing -L/usr/local/lib -shared -Wl=2C-soname=2Cspectraextension.so -o ../../../../lib/spectraextension.so CMakeFiles/spectraextension.dir/spectraextension.cpp.o CMakeFiles/spectraextension.dir/spectradialog.cpp.o CMakeFiles/spectraextension.dir/spectratype.cpp.o CMakeFiles/spectraextension.dir/abstract_ir.cpp.o CMakeFiles/spectraextension.dir/ir.cpp.o CMakeFiles/spectraextension.dir/nmr.cpp.o CMakeFiles/spectraextension.dir/dos.cpp.o CMakeFiles/spectraextension.dir/uv.cpp.o CMakeFiles/spectraextension.dir/cd.cpp.o CMakeFiles/spectraextension.dir/raman.cpp.o CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o CMakeFiles/spectraextension.dir/moc_abstract_ir.cxx.o CMakeFiles/spectraextension.dir/moc_ir.cxx.o CMakeFiles/spectraextension.dir/moc_nmr.cxx.o CMakeFiles/spectraextension.dir/moc_dos.cxx.o CMakeFiles/spectraextension.dir/moc_uv.cxx.o CMakeFiles/spectraextension.dir/moc_cd.cxx.o CMakeFiles/spectraextension.dir/moc_raman.cxx.o -L/usr/local/lib ../../../../lib/libavogadro.so.1.1.0 /usr/local/lib/qt4/li= bQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel -Wl=2C-rpath=2C/usr/ports/science/avogadro/work/avogadro-1.1.0/lib:/usr/loc= al/lib:/usr/local/lib/qt4: /usr/local/bin/cmake -E cmake_progress_report /usr/ports/science/avogadro/work/avogadro-1.1.0/CMake= Files 85 86 87 88 89 [ 65%] Built target spectraextension 1 error *** Error code 2 1 error *** Error code 1 The full build log can be viewed here: "http://seibercom.net/logs/avogadro_build.txt" --=20 Carmel =E2=9C=8C carmel_ny@hotmail.com