Date: Sat, 31 Aug 2019 15:09:47 +0000 (UTC) From: Yuri Victorovich <yuri@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r510395 - in head/biology/ngs-sdk: . files Message-ID: <201908311509.x7VF9lua059715@repo.freebsd.org>
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Author: yuri Date: Sat Aug 31 15:09:47 2019 New Revision: 510395 URL: https://svnweb.freebsd.org/changeset/ports/510395 Log: biology/ngs-sdk: Update 2.9.6 -> 2.10.0 Reported by: portscout Modified: head/biology/ngs-sdk/Makefile head/biology/ngs-sdk/distinfo head/biology/ngs-sdk/files/patch-ngs-sdk_setup_konfigure.perl head/biology/ngs-sdk/pkg-plist Modified: head/biology/ngs-sdk/Makefile ============================================================================== --- head/biology/ngs-sdk/Makefile Sat Aug 31 15:03:00 2019 (r510394) +++ head/biology/ngs-sdk/Makefile Sat Aug 31 15:09:47 2019 (r510395) @@ -1,7 +1,7 @@ # $FreeBSD$ PORTNAME= ngs -DISTVERSION= 2.9.6 +DISTVERSION= 2.10.0 CATEGORIES= biology PKGNAMESUFFIX= -sdk Modified: head/biology/ngs-sdk/distinfo ============================================================================== --- head/biology/ngs-sdk/distinfo Sat Aug 31 15:03:00 2019 (r510394) +++ head/biology/ngs-sdk/distinfo Sat Aug 31 15:09:47 2019 (r510395) @@ -1,3 +1,3 @@ -TIMESTAMP = 1554002979 -SHA256 (ncbi-ngs-2.9.6_GH0.tar.gz) = 4be42f4d62b2376dc2fc4cd992822525bd99f8e1193008c2dab387a2f291405b -SIZE (ncbi-ngs-2.9.6_GH0.tar.gz) = 1092167 +TIMESTAMP = 1567263810 +SHA256 (ncbi-ngs-2.10.0_GH0.tar.gz) = 4139adff83af213d7880bc80d1c0f5ee9b00c6c4e615d00aa47aaa267e40ed25 +SIZE (ncbi-ngs-2.10.0_GH0.tar.gz) = 1093883 Modified: head/biology/ngs-sdk/files/patch-ngs-sdk_setup_konfigure.perl ============================================================================== --- head/biology/ngs-sdk/files/patch-ngs-sdk_setup_konfigure.perl Sat Aug 31 15:03:00 2019 (r510394) +++ head/biology/ngs-sdk/files/patch-ngs-sdk_setup_konfigure.perl Sat Aug 31 15:09:47 2019 (r510395) @@ -1,6 +1,6 @@ ---- ngs-sdk/setup/konfigure.perl.orig 2018-02-23 22:53:52 UTC +--- ngs-sdk/setup/konfigure.perl.orig 2019-08-20 18:05:02 UTC +++ ngs-sdk/setup/konfigure.perl -@@ -202,7 +202,7 @@ print "checking system type... " unless +@@ -202,7 +202,7 @@ print "checking system type... " unless ($AUTORUN); my ($OS, $ARCH, $OSTYPE, $MARCH, @ARCHITECTURES) = OsArch(); println $OSTYPE unless ($AUTORUN); @@ -9,7 +9,7 @@ println "configure: error: unsupported system '$OSTYPE'"; exit 1; } -@@ -215,6 +215,10 @@ if ($OS eq 'linux') { +@@ -221,6 +221,10 @@ if ($OS eq 'linux') { println $OS_DISTRIBUTOR unless ($AUTORUN); } @@ -20,7 +20,7 @@ print "checking machine architecture... " unless ($AUTORUN); println $MARCH unless ($AUTORUN); unless ($MARCH =~ /x86_64/i || $MARCH =~ /i?86/i) { -@@ -326,6 +330,16 @@ if ($OSTYPE =~ /linux/i) { +@@ -332,6 +336,16 @@ if ($OSTYPE =~ /linux/i) { $EXEX = ''; $OSINC = 'unix'; $TOOLS = 'gcc' unless ($TOOLS); @@ -37,11 +37,11 @@ } elsif ($OSTYPE =~ /darwin/i) { $LPFX = 'lib'; $OBJX = 'o'; -@@ -371,11 +385,11 @@ if ($TOOLS =~ /gcc$/) { +@@ -377,11 +391,11 @@ if ($TOOLS =~ /gcc$/) { } elsif ($TOOLS eq 'clang') { $CPP = 'clang++' unless ($CPP); $CC = 'clang -c'; -- my $versionMin = '-mmacosx-version-min=10.6'; +- my $versionMin = '-mmacosx-version-min=10.10'; + my $versionMin = ''; $CP = "$CPP -c $versionMin"; if ($BITS ne '32_64') { @@ -51,7 +51,7 @@ $AR = 'ar rc'; $LD = "clang $ARCH_FL"; $LP = "$CPP $versionMin $ARCH_FL"; -@@ -463,7 +477,7 @@ foreach my $href (DEPENDS()) { +@@ -478,7 +492,7 @@ foreach my $href (DEPENDS()) { $I = $t if (-e $t); } push ( @L, File::Spec->catdir($OPT{$o}, 'lib') ); @@ -60,7 +60,7 @@ } my ($i, $l) = find_lib($_, $I, @L); if (defined $i || $l) { -@@ -881,8 +895,7 @@ EndText +@@ -898,8 +912,7 @@ EndText L($F, "PIC = $PIC") if ($PIC); if ($PKG{LNG} eq 'C') { if ($TOOLS =~ /clang/i) { Modified: head/biology/ngs-sdk/pkg-plist ============================================================================== --- head/biology/ngs-sdk/pkg-plist Sat Aug 31 15:03:00 2019 (r510394) +++ head/biology/ngs-sdk/pkg-plist Sat Aug 31 15:09:47 2019 (r510395) @@ -92,4 +92,4 @@ lib/libngs-adapt-c++.a lib/libngs-c++.a lib/libngs-sdk.so lib/libngs-sdk.so.2 -lib/libngs-sdk.so.2.9.6 +lib/libngs-sdk.so.2.10.0
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