From owner-svn-ports-all@freebsd.org Sat Jan 11 14:20:00 2020 Return-Path: Delivered-To: svn-ports-all@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id ECE071EBE89; Sat, 11 Jan 2020 14:20:00 +0000 (UTC) (envelope-from jwb@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) server-signature RSA-PSS (4096 bits) client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 47w27463d3z47V2; Sat, 11 Jan 2020 14:20:00 +0000 (UTC) (envelope-from jwb@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id CB3AE4262; Sat, 11 Jan 2020 14:20:00 +0000 (UTC) (envelope-from jwb@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id 00BEK063075268; Sat, 11 Jan 2020 14:20:00 GMT (envelope-from jwb@FreeBSD.org) Received: (from jwb@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id 00BEK0Ru075266; Sat, 11 Jan 2020 14:20:00 GMT (envelope-from jwb@FreeBSD.org) Message-Id: <202001111420.00BEK0Ru075266@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: jwb set sender to jwb@FreeBSD.org using -f From: "Jason W. Bacon" Date: Sat, 11 Jan 2020 14:20:00 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r522687 - head/biology/py-macs2 X-SVN-Group: ports-head X-SVN-Commit-Author: jwb X-SVN-Commit-Paths: head/biology/py-macs2 X-SVN-Commit-Revision: 522687 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-all@freebsd.org X-Mailman-Version: 2.1.29 Precedence: list List-Id: SVN commit messages for the ports tree List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sat, 11 Jan 2020 14:20:01 -0000 Author: jwb Date: Sat Jan 11 14:20:00 2020 New Revision: 522687 URL: https://svnweb.freebsd.org/changeset/ports/522687 Log: biology/py-macs2: Upgrade to 2.2.6 Bug fixes and performance improvements Now require python 3.6+ Reported by: portscout Modified: head/biology/py-macs2/Makefile head/biology/py-macs2/distinfo (contents, props changed) Modified: head/biology/py-macs2/Makefile ============================================================================== --- head/biology/py-macs2/Makefile Sat Jan 11 13:49:12 2020 (r522686) +++ head/biology/py-macs2/Makefile Sat Jan 11 14:20:00 2020 (r522687) @@ -1,28 +1,25 @@ # $FreeBSD$ -PORTNAME= macs2 -PORTVERSION= 2.1.0.p20170505 -PORTREVISION= 3 -CATEGORIES= biology python -PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} +PORTNAME= macs2 +DISTVERSIONPREFIX= v +DISTVERSION= 2.2.6 +CATEGORIES= biology python +PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= jwb@FreeBSD.org -COMMENT= Analysis of chromatin immunoprecipitation (ChIP) sequences +COMMENT= Identify transcription factor binding sites LICENSE= BSD3CLAUSE -LICENSE_FILE= ${WRKSRC}/COPYING +LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYNUMPY} -USES= python:2.7 +USES= python:3.6+ USE_PYTHON= autoplist concurrent cython distutils USE_GITHUB= yes GH_ACCOUNT= taoliu GH_PROJECT= MACS -GH_TAGNAME= 6946b2f - -PYSETUP= setup_w_cython.py post-stage: ${STRIP_CMD} \ Modified: head/biology/py-macs2/distinfo ============================================================================== --- head/biology/py-macs2/distinfo Sat Jan 11 13:49:12 2020 (r522686) +++ head/biology/py-macs2/distinfo Sat Jan 11 14:20:00 2020 (r522687) @@ -1,3 +1,3 @@ -TIMESTAMP = 1512241922 -SHA256 (taoliu-MACS-2.1.0.p20170505-6946b2f_GH0.tar.gz) = c6e4fb8b69b955134399fcdfc075cea5fbc29fabbc46cc4e9acdedeb1174fcfd -SIZE (taoliu-MACS-2.1.0.p20170505-6946b2f_GH0.tar.gz) = 159560613 +TIMESTAMP = 1578626999 +SHA256 (taoliu-MACS-v2.2.6_GH0.tar.gz) = 7c51561787d15d85370b11c9121e4ab7174ce11cfde36043b9ee95de8451db3a +SIZE (taoliu-MACS-v2.2.6_GH0.tar.gz) = 133721230