From owner-svn-ports-head@FreeBSD.ORG Mon Jul 15 14:50:23 2013 Return-Path: Delivered-To: svn-ports-head@freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) by hub.freebsd.org (Postfix) with ESMTP id 251C613C; Mon, 15 Jul 2013 14:50:23 +0000 (UTC) (envelope-from miwi@FreeBSD.org) Received: from svn.freebsd.org (svn.freebsd.org [IPv6:2001:1900:2254:2068::e6a:0]) by mx1.freebsd.org (Postfix) with ESMTP id 16E449D; Mon, 15 Jul 2013 14:50:23 +0000 (UTC) Received: from svn.freebsd.org ([127.0.1.70]) by svn.freebsd.org (8.14.7/8.14.7) with ESMTP id r6FEoMvk033859; Mon, 15 Jul 2013 14:50:22 GMT (envelope-from miwi@svn.freebsd.org) Received: (from miwi@localhost) by svn.freebsd.org (8.14.7/8.14.5/Submit) id r6FEoMpP033855; Mon, 15 Jul 2013 14:50:22 GMT (envelope-from miwi@svn.freebsd.org) Message-Id: <201307151450.r6FEoMpP033855@svn.freebsd.org> From: Martin Wilke Date: Mon, 15 Jul 2013 14:50:22 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r323046 - in head/biology/tinker: . files X-SVN-Group: ports-head MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-head@freebsd.org X-Mailman-Version: 2.1.14 Precedence: list List-Id: SVN commit messages for the ports tree for head List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Mon, 15 Jul 2013 14:50:23 -0000 Author: miwi Date: Mon Jul 15 14:50:22 2013 New Revision: 323046 URL: http://svnweb.freebsd.org/changeset/ports/323046 Log: - Update to 6.2.06 PR: 180518 Submitted by: Ports Fury Modified: head/biology/tinker/Makefile head/biology/tinker/distinfo head/biology/tinker/files/patch-make__Makefile head/biology/tinker/pkg-plist Modified: head/biology/tinker/Makefile ============================================================================== --- head/biology/tinker/Makefile Mon Jul 15 14:49:39 2013 (r323045) +++ head/biology/tinker/Makefile Mon Jul 15 14:50:22 2013 (r323046) @@ -2,7 +2,7 @@ # $FreeBSD$ PORTNAME= tinker -PORTVERSION= 6.2.05 +PORTVERSION= 6.2.06 CATEGORIES= biology MASTER_SITES= http://dasher.wustl.edu/tinker/downloads/ @@ -39,6 +39,9 @@ FFLAGS+= -mfancy-math-387 -malign-double post-extract: @${CHMOD} -R u+w ${WRKSRC} +pre-build: + @${RM} -f ${BUILD_WRKSRC}/*.c + post-install: @${MKDIR} ${DATADIR} (cd ${INSTALL_WRKSRC} && ${INSTALL_DATA} tinker.txt ${DATADIR}) Modified: head/biology/tinker/distinfo ============================================================================== --- head/biology/tinker/distinfo Mon Jul 15 14:49:39 2013 (r323045) +++ head/biology/tinker/distinfo Mon Jul 15 14:50:22 2013 (r323046) @@ -1,2 +1,2 @@ -SHA256 (tinker-6.2.05.tar.gz) = 73dcb0fff809bd38e8fbede896b778302ff1e89c90129ca30b54d773b2ea8e50 -SIZE (tinker-6.2.05.tar.gz) = 20246464 +SHA256 (tinker-6.2.06.tar.gz) = 6d5e79cd2a431787cd77bce2c469b7eec219f8e874425dcf8ebb74dabb0d985c +SIZE (tinker-6.2.06.tar.gz) = 20182802 Modified: head/biology/tinker/files/patch-make__Makefile ============================================================================== --- head/biology/tinker/files/patch-make__Makefile Mon Jul 15 14:49:39 2013 (r323045) +++ head/biology/tinker/files/patch-make__Makefile Mon Jul 15 14:50:22 2013 (r323046) @@ -53,18 +53,18 @@ ## ## Machine: Macintosh -@@ -595,6 +609,8 @@ +@@ -597,14 +611,13 @@ xyzpdb.x \ xyzsybyl.x +-%.o: %.f +- ${F77} ${F77FLAGS} ${OPTFLAGS} $< -o $@ +.SUFFIXES: .x -+ - .f.o: - ${F77} ${F77FLAGS} ${OPTFLAGS} $*.f - -@@ -604,8 +620,8 @@ - server.o: - ${F77} ${F77FLAGS} ${OPTFLAGS} server.f + +-%.o: %.c +- ${CC} ${CFLAGS} ${INCLUDEDIR} ${OPTFLAGS} $< ++.f.o: ++ ${F77} ${F77FLAGS} ${OPTFLAGS} $< -o $@ -%.x: %.o libtinker.a - ${F77} ${LINKFLAGS} -o $@ $^ ${LIBS}; strip $@ @@ -73,14 +73,19 @@ all: ${EXEFILES} -@@ -616,66 +632,66 @@ - cat *.i *.f *.c > tinker.txt +@@ -612,70 +625,70 @@ + rm -f *.o *.a *.x + + listing: +- cat *.i *.f *.c > tinker.txt ++ cat *.i *.f > tinker.txt rename: - mv alchemy.x $(BINDIR)/alchemy - mv analyze.x $(BINDIR)/analyze - mv anneal.x $(BINDIR)/anneal - mv archive.x $(BINDIR)/archive +- mv bar.x $(BINDIR)/bar - mv correlate.x $(BINDIR)/correlate - mv crystal.x $(BINDIR)/crystal - mv diffuse.x $(BINDIR)/diffuse @@ -141,6 +146,7 @@ + ${BSD_INSTALL_PROGRAM} analyze.x $(BINDIR)/analyze + ${BSD_INSTALL_PROGRAM} anneal.x $(BINDIR)/anneal + ${BSD_INSTALL_PROGRAM} archive.x $(BINDIR)/archive ++ ${BSD_INSTALL_PROGRAM} bar.x $(BINDIR)/bar + ${BSD_INSTALL_PROGRAM} correlate.x $(BINDIR)/correlate + ${BSD_INSTALL_PROGRAM} crystal.x $(BINDIR)/crystal + ${BSD_INSTALL_PROGRAM} diffuse.x $(BINDIR)/diffuse Modified: head/biology/tinker/pkg-plist ============================================================================== --- head/biology/tinker/pkg-plist Mon Jul 15 14:49:39 2013 (r323045) +++ head/biology/tinker/pkg-plist Mon Jul 15 14:50:22 2013 (r323046) @@ -2,6 +2,7 @@ bin/alchemy bin/analyze bin/anneal bin/archive +bin/bar bin/correlate bin/crystal bin/diffuse @@ -156,6 +157,7 @@ bin/xyzsybyl %%PORTEXAMPLES%%%%EXAMPLESDIR%%/copper.xyz %%PORTEXAMPLES%%%%EXAMPLESDIR%%/cpentene.key %%PORTEXAMPLES%%%%EXAMPLESDIR%%/cpentene.xyz +%%PORTEXAMPLES%%%%EXAMPLESDIR%%/crambin.dyn %%PORTEXAMPLES%%%%EXAMPLESDIR%%/crambin.key %%PORTEXAMPLES%%%%EXAMPLESDIR%%/crambin.pdb %%PORTEXAMPLES%%%%EXAMPLESDIR%%/crambin.seq @@ -279,7 +281,6 @@ bin/xyzsybyl %%PORTEXAMPLES%%%%EXAMPLESDIR%%/melittin.xyz %%PORTEXAMPLES%%%%EXAMPLESDIR%%/membrane.key %%PORTEXAMPLES%%%%EXAMPLESDIR%%/membrane.xyz -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/meohbox.dyn %%PORTEXAMPLES%%%%EXAMPLESDIR%%/meohbox.key %%PORTEXAMPLES%%%%EXAMPLESDIR%%/meohbox.xyz %%PORTEXAMPLES%%%%EXAMPLESDIR%%/methane.int