From owner-freebsd-pkg-fallout@freebsd.org Fri Mar 11 21:26:13 2016 Return-Path: Delivered-To: freebsd-pkg-fallout@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 9AA5CACC373 for ; Fri, 11 Mar 2016 21:26:13 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mailman.ysv.freebsd.org (mailman.ysv.freebsd.org [IPv6:2001:1900:2254:206a::50:5]) by mx1.freebsd.org (Postfix) with ESMTP id 8982ABEC for ; Fri, 11 Mar 2016 21:26:13 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: by mailman.ysv.freebsd.org (Postfix) id 85840ACC372; Fri, 11 Mar 2016 21:26:13 +0000 (UTC) Delivered-To: pkg-fallout@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 6C8C5ACC371 for ; Fri, 11 Mar 2016 21:26:13 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy8.nyi.freebsd.org (beefy8.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:eb]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mx1.freebsd.org (Postfix) with ESMTPS id 3EBC4BEB for ; Fri, 11 Mar 2016 21:26:13 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy8.nyi.freebsd.org (localhost [127.0.0.1]) by beefy8.nyi.freebsd.org (8.15.2/8.15.2) with ESMTP id u2BLQC3p031822 for ; Fri, 11 Mar 2016 21:26:12 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by beefy8.nyi.freebsd.org (8.15.2/8.15.2/Submit) id u2BLQCVh031820; Fri, 11 Mar 2016 21:26:12 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Fri, 11 Mar 2016 21:26:12 GMT From: pkg-fallout@FreeBSD.org Message-Id: <201603112126.u2BLQCVh031820@beefy8.nyi.freebsd.org> To: pkg-fallout@FreeBSD.org Subject: [package - head-armv6-default][biology/biojava] Failed for biojava-1.7, 1 in build X-BeenThere: freebsd-pkg-fallout@freebsd.org X-Mailman-Version: 2.1.21 Precedence: list List-Id: Fallout logs from package building List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Fri, 11 Mar 2016 21:26:13 -0000 You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: wenheping@gmail.com Last committer: ohauer@FreeBSD.org Ident: $FreeBSD: head/biology/biojava/Makefile 356092 2014-06-01 10:37:22Z ohauer $ Log URL: http://beefy8.nyi.freebsd.org/data/head-armv6-default/p410528_s296455/logs/biojava-1.7,1.log Build URL: http://beefy8.nyi.freebsd.org/build.html?mastername=head-armv6-default&build=p410528_s296455 Log: ====>> Building biology/biojava build started at Fri Mar 11 21:24:49 UTC 2016 port directory: /usr/ports/biology/biojava building for: FreeBSD head-armv6-default-job-03 11.0-CURRENT FreeBSD 11.0-CURRENT r296455 arm maintained by: wenheping@gmail.com Makefile ident: $FreeBSD: head/biology/biojava/Makefile 356092 2014-06-01 10:37:22Z ohauer $ Poudriere version: 3.1.12 Host OSVERSION: 1100100 Jail OSVERSION: 1100101 !!! Jail is newer than host. (Jail: 1100101, Host: 1100100) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh UNAME_p=armv6 UNAME_m=arm ABI_FILE=/usr/lib/crt1.o UNAME_v=FreeBSD 11.0-CURRENT r296455 UNAME_r=11.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 OPSYS=FreeBSD ARCH=armv6 LINUX_OSRELEASE=2.6.32 SAVED_TERM=screen QEMU_EMULATING=1 MASTERMNT=/usr/local/poudriere/data/.m/head-armv6-default/ref UID=0 PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin _JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+ POUDRIERE_BUILD_TYPE=bulk PKGNAME=biojava-1.7,1 OSREL=11.0 _OSRELEASE=11.0-CURRENT PYTHONBASE=/usr/local OLDPWD=/ _SMP_CPUS=24 PWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p/pool MASTERNAME=head-armv6-default SCRIPTPREFIX=/usr/local/share/poudriere _JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun USER=root HOME=/root POUDRIERE_VERSION=3.1.12 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh CONFIGURE_MAX_CMD_LEN=262144 LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local PACKAGE_BUILDING=yes _JAVA_OS_LIST_REGEXP=native\|linux OSVERSION=1100101 ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for biojava-1.7,1: DOCS=on: Build and/or install documentation EXAMPLES=on: Build and/or install examples ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/biojava/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/biojava/work HOME=/wrkdirs/usr/ports/biology/biojava/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- CLASSPATH="/usr/local/share/java/classes" JAVA_HOME=/usr/local/openjdk8 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/biojava/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/biojava/work HOME=/wrkdirs/usr/ports/biology/biojava/work TMPDIR="/tmp" NO_PIE=yes WITHOUT_DEBUG_FILES=yes WITHOUT_KERNEL_SYMBOLS=yes SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -mfloat-abi=softfp -fno-strict-aliasing" CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -mfloat-abi=softfp -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- JAVASHAREDIR="share/java" JAVAJARDIR="share/java/classes" OSREL=11.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/biojava" EXAMPLESDIR="share/examples/biojava" DATADIR="share/biojava" WWWDIR="www/biojava" ETCDIR="etc/biojava" --End PLIST_SUB-- --SUB_LIST-- JAVASHAREDIR="/usr/local/share/java" JAVAJARDIR="/usr/local/share/java/classes" JAVALIBDIR="/usr/local/share/java/classes" JAVA_VERSION="1.6+" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/biojava DOCSDIR=/usr/local/share/doc/biojava EXAMPLESDIR=/usr/local/share/examples/biojava WWWDIR=/usr/local/www/biojava ETCDIR=/usr/local/etc/biojava --End SUB_LIST-- ---Begin make.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex MACHINE=arm MACHINE_ARCH=armv6 ARCH=${MACHINE_ARCH} .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles #### /usr/local/etc/poudriere.d/make.conf #### DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- =================================================== =========================================================================== =================================================== ===> biojava-1.7,1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.6.4_1.txz [head-armv6-default-job-03] Installing pkg-1.6.4_1... [head-armv6-default-job-03] Extracting pkg-1.6.4_1: .......... done ===> biojava-1.7,1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of biojava-1.7,1 =========================================================================== =================================================== =========================================================================== =================================================== ===> Fetching all distfiles required by biojava-1.7,1 for building =========================================================================== =================================================== ===> Fetching all distfiles required by biojava-1.7,1 for building => SHA256 Checksum OK for biojava-1.7-all.jar. =========================================================================== =================================================== =========================================================================== =================================================== ===> Fetching all distfiles required by biojava-1.7,1 for building ===> Extracting for biojava-1.7,1 => SHA256 Checksum OK for biojava-1.7-all.jar. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for biojava-1.7,1 =========================================================================== =================================================== ===> biojava-1.7,1 depends on file: /usr/local/openjdk8/bin/java - not found ===> Installing existing package /packages/All/openjdk8-8.72.15.txz [head-armv6-default-job-03] Installing openjdk8-8.72.15... [head-armv6-default-job-03] `-- Installing giflib-5.1.2_1... [head-armv6-default-job-03] `-- Extracting giflib-5.1.2_1: .......... done [head-armv6-default-job-03] `-- Installing libXt-1.1.5,1... [head-armv6-default-job-03] | `-- Installing xproto-7.0.28... [head-armv6-default-job-03] | `-- Extracting xproto-7.0.28: .......... done [head-armv6-default-job-03] | `-- Installing libSM-1.2.2_3,1... [head-armv6-default-job-03] | | `-- Installing libICE-1.0.9_1,1... [head-armv6-default-job-03] | | `-- Extracting libICE-1.0.9_1,1: .......... done [head-armv6-default-job-03] | `-- Extracting libSM-1.2.2_3,1: .......... done [head-armv6-default-job-03] | `-- Installing libX11-1.6.3,1... [head-armv6-default-job-03] | | `-- Installing kbproto-1.0.7... [head-armv6-default-job-03] | | `-- Extracting kbproto-1.0.7: .......... done [head-armv6-default-job-03] | | `-- Installing libXdmcp-1.1.2... [head-armv6-default-job-03] | | `-- Extracting libXdmcp-1.1.2: ......... done [head-armv6-default-job-03] | | `-- Installing libxcb-1.11.1... [head-armv6-default-job-03] | | `-- Installing libxml2-2.9.3... [head-armv6-default-job-03] | | `-- Extracting libxml2-2.9.3: .......... done [head-armv6-default-job-03] | | `-- Installing libpthread-stubs-0.3_6... [head-armv6-default-job-03] | | `-- Extracting libpthread-stubs-0.3_6: ..... done [head-armv6-default-job-03] | | `-- Installing libXau-1.0.8_3... [head-armv6-default-job-03] | | `-- Extracting libXau-1.0.8_3: .......... done [head-armv6-default-job-03] | | `-- Extracting libxcb-1.11.1: .......... done [head-armv6-default-job-03] | `-- Extracting libX11-1.6.3,1: .......... done [head-armv6-default-job-03] `-- Extracting libXt-1.1.5,1: .......... done [head-armv6-default-job-03] `-- Installing libXtst-1.2.2_3... [head-armv6-default-job-03] | `-- Installing libXext-1.3.3_1,1... [head-armv6-default-job-03] | | `-- Installing xextproto-7.3.0... [head-armv6-default-job-03] | | `-- Extracting xextproto-7.3.0: .......... done [head-armv6-default-job-03] | `-- Extracting libXext-1.3.3_1,1: .......... done [head-armv6-default-job-03] | `-- Installing inputproto-2.3.1... [head-armv6-default-job-03] | `-- Extracting inputproto-2.3.1: ..... done [head-armv6-default-job-03] | `-- Installing libXi-1.7.6,1... [head-armv6-default-job-03] | | `-- Installing libXfixes-5.0.1_3... [head-armv6-default-job-03] | | `-- Installing fixesproto-5.0... [head-armv6-default-job-03] | | `-- Extracting fixesproto-5.0: .... done [head-armv6-default-job-03] | | `-- Extracting libXfixes-5.0.1_3: .......... done [head-armv6-default-job-03] | `-- Extracting libXi-1.7.6,1: .......... done [head-armv6-default-job-03] | `-- Installing recordproto-1.14.2... [head-armv6-default-job-03] | `-- Extracting recordproto-1.14.2: .... done [head-armv6-default-job-03] `-- Extracting libXtst-1.2.2_3: .......... done [head-armv6-default-job-03] `-- Installing libffi-3.2.1... [head-armv6-default-job-03] | `-- Installing indexinfo-0.2.4... [head-armv6-default-job-03] | `-- Extracting indexinfo-0.2.4: .... done [head-armv6-default-job-03] `-- Extracting libffi-3.2.1: .......... done [head-armv6-default-job-03] `-- Installing java-zoneinfo-2015.g... [head-armv6-default-job-03] `-- Extracting java-zoneinfo-2015.g: .......... done [head-armv6-default-job-03] `-- Installing libXrender-0.9.9... [head-armv6-default-job-03] | `-- Installing renderproto-0.11.1... [head-armv6-default-job-03] | `-- Extracting renderproto-0.11.1: .... done [head-armv6-default-job-03] `-- Extracting libXrender-0.9.9: .......... done [head-armv6-default-job-03] `-- Installing freetype2-2.6.3... [head-armv6-default-job-03] `-- Extracting freetype2-2.6.3: .......... done [head-armv6-default-job-03] `-- Installing alsa-lib-1.1.0... [head-armv6-default-job-03] `-- Extracting alsa-lib-1.1.0: .......... done [head-armv6-default-job-03] `-- Installing fontconfig-2.11.1_1,1... [head-armv6-default-job-03] | `-- Installing expat-2.1.0_3... [head-armv6-default-job-03] | `-- Extracting expat-2.1.0_3: .......... done [head-armv6-default-job-03] `-- Extracting fontconfig-2.11.1_1,1: .......... done Running fc-cache to build fontconfig cache... /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory /root/.local/share/fonts: skipping, no such directory /root/.fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory /root/.cache/fontconfig: not cleaning non-existent cache directory /root/.fontconfig: not cleaning non-existent cache directory fc-cache: succeeded [head-armv6-default-job-03] `-- Installing dejavu-2.35... [head-armv6-default-job-03] | `-- Installing mkfontdir-1.0.7... [head-armv6-default-job-03] | | `-- Installing mkfontscale-1.1.2... [head-armv6-default-job-03] | | `-- Installing libfontenc-1.1.3... [head-armv6-default-job-03] | | `-- Extracting libfontenc-1.1.3: ...... done [head-armv6-default-job-03] | | `-- Extracting mkfontscale-1.1.2: .. done [head-armv6-default-job-03] | `-- Extracting mkfontdir-1.0.7: .. done [head-armv6-default-job-03] `-- Extracting dejavu-2.35: .......... done [head-armv6-default-job-03] `-- Installing javavmwrapper-2.5... [head-armv6-default-job-03] `-- Extracting javavmwrapper-2.5: .......... done [head-armv6-default-job-03] Extracting openjdk8-8.72.15: .......... done Message from dejavu-2.35: Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. Message from openjdk8-8.72.15: ====================================================================== This OpenJDK implementation requires fdescfs(5) mounted on /dev/fd and procfs(5) mounted on /proc. If you have not done it yet, please do the following: mount -t fdescfs fdesc /dev/fd mount -t procfs proc /proc To make it permanent, you need the following lines in /etc/fstab: fdesc /dev/fd fdescfs rw 0 0 proc /proc procfs rw 0 0 ====================================================================== ===> biojava-1.7,1 depends on file: /usr/local/openjdk8/bin/java - found ===> Returning to build of biojava-1.7,1 ===> biojava-1.7,1 depends on file: /usr/local/bin/ant - not found ===> Installing existing package /packages/All/apache-ant-1.9.4.txz [head-armv6-default-job-03] Installing apache-ant-1.9.4... [head-armv6-default-job-03] Extracting apache-ant-1.9.4: .......... done ===> biojava-1.7,1 depends on file: /usr/local/bin/ant - found ===> Returning to build of biojava-1.7,1 =========================================================================== =================================================== =========================================================================== =================================================== ===> Configuring for biojava-1.7,1 =========================================================================== =================================================== ===> Building for biojava-1.7,1 *** Signal 11 Stop. make: stopped in /usr/ports/biology/biojava