Date: Thu, 16 Aug 2007 13:59:34 -0300 From: Eduardo <edulsa@laplace.quimica.ufpr.br> To: ports@FreeBSD.org Subject: about molden4.5 in 5.5-RELEASE Message-ID: <20070816165934.GA59025@laplace.quimica.ufpr.br>
next in thread | raw e-mail | index | archive | help
--ew6BAiZeqk4r7MaW
Content-Type: text/plain; charset=us-ascii
Content-Disposition: inline
Hi Porters
Thank you for support us!!!
I am having problems to install the almost newest (the newest is molden4.6) molden to FreeBSD5.5-p#15.
The compilation log file is attched in this email.
I think it is important to say: I updated to newest Xorg (xorg-7.2) last week. Older molden versions compiled
under XF86 are still running, but not the 4.5 version
Thanks for you attention
Yours
Eduardo
ps.: by the way:
laplace /home/edulsa> uname -a
FreeBSD laplace.quimica.ufpr.br 5.5-RELEASE-p15 FreeBSD 5.5-RELEASE-p15 #0: Fri Aug 3 15:39:48 BRT 2007 edulsa@laplace.quimica.ufpr.br:/usr/src/sys/i386/compile/MYKERNEL i386
% laplace /home/edulsa>
--
Eduardo Lemos de Sa
Associated Professor at Chemistry Department
Universidade Federal do Parana
Dep. Quimica, P. Box 19081, 81531-990 Curitiba PR / Brazil
phone: +55(41)33613300
fax : +55(41)33613186
--ew6BAiZeqk4r7MaW
Content-Type: text/plain; charset=us-ascii
Content-Disposition: attachment; filename="molden.log"
Content-Transfer-Encoding: quoted-printable
=3D=3D=3D> Cleaning for molden-4.5_1
=3D=3D=3D> Vulnerability check disabled, database not found
=3D=3D=3D> Extracting for molden-4.5_1
=3D> MD5 Checksum OK for molden-4.5_1/molden4.5.tar.Z.
=3D> SHA256 Checksum OK for molden-4.5_1/molden4.5.tar.Z.
=3D=3D=3D> Patching for molden-4.5_1
=3D=3D=3D> Applying FreeBSD patches for molden-4.5_1
/usr/bin/sed -i.bak -e 's,malloc.h,stdlib.h,' /usr2/ports/biology/molden/wo=
rk/molden4.5/xwin.c
=3D=3D=3D> molden-4.5_1 depends on executable: gfortran42 - found
=3D=3D=3D> molden-4.5_1 depends on file: /usr/local/libdata/xorg/librarie=
s - found
=3D=3D=3D> molden-4.5_1 depends on shared library: glut.4 - found
=3D=3D=3D> Configuring for molden-4.5_1
********************
** If you want to use a larger MOLDEN,
** edit change_parameter.sh and run it,
** before \'make build\'.
********************
=3D=3D=3D> Building for molden-4.5_1
gfortran42 -O -malign-double -c atomdens.f
gfortran42 -O -malign-double -c molden.f
gfortran42 -O -malign-double -c above.f
gfortran42 -O -malign-double -c actcal.f
gfortran42 -O -malign-double -c basprt.f
basprt.f:23.44:
& 3hs ,3hsp ,3hd ,3hf ,3hg / =20
1
Warning: Extension: Hollerith constant at (1)
basprt.f:19.23:
data namesh/3hs ,3hsp ,3hspd,3hf ,3hg , =20
1
Warning: Extension: Conversion from HOLLERITH to INTEGER(4) at (1)
basprt.f:19.29:
data namesh/3hs ,3hsp ,3hspd,3hf ,3hg , =20
1
Warning: Extension: Conversion from HOLLERITH to INTEGER(4) at (1)
basprt.f:19.35:
data namesh/3hs ,3hsp ,3hspd,3hf ,3hg , =20
1
Warning: Extension: Conversion from HOLLERITH to INTEGER(4) at (1)
basprt.f:19.41:
data namesh/3hs ,3hsp ,3hspd,3hf ,3hg , =20
1
Warning: Extension: Conversion from HOLLERITH to INTEGER(4) at (1)
basprt.f:19.47:
data namesh/3hs ,3hsp ,3hspd,3hf ,3hg , =20
1
Warning: Extension: Conversion from HOLLERITH to INTEGER(4) at (1)
basprt.f:20.23:
& 3h???,3hp ,3hd ,3h???,3hg , =20
1
Warning: Extension: Conversion from HOLLERITH to INTEGER(4) at (1)
basprt.f:20.29:
& 3h???,3hp ,3hd ,3h???,3hg , =20
1
Warning: Extension: Conversion from HOLLERITH to INTEGER(4) at (1)
basprt.f:20.35:
& 3h???,3hp ,3hd ,3h???,3hg , =20
1
Warning: Extension: Conversion from HOLLERITH to INTEGER(4) at (1)
basprt.f:20.41:
& 3h???,3hp ,3hd ,3h???,3hg , =20
1
Warning: Extension: Conversion from HOLLERITH to INTEGER(4) at (1)
basprt.f:20.47:
& 3h???,3hp ,3hd ,3h???,3hg , =20
1
Warning: Extension: Conversion from HOLLERITH to INTEGER(4) at (1)
basprt.f:21.23:
& 3hs ,3hsp ,3hd ,3hf ,3hg , =20
1
Warning: Extension: Conversion from HOLLERITH to INTEGER(4) at (1)
basprt.f:21.29:
& 3hs ,3hsp ,3hd ,3hf ,3hg , =20
1
Warning: Extension: Conversion from HOLLERITH to INTEGER(4) at (1)
basprt.f:21.35:
& 3hs ,3hsp ,3hd ,3hf ,3hg , =20
1
Warning: Extension: Conversion from HOLLERITH to INTEGER(4) at (1)
basprt.f:21.41:
& 3hs ,3hsp ,3hd ,3hf ,3hg , =20
1
Warning: Extension: Conversion from HOLLERITH to INTEGER(4) at (1)
basprt.f:21.47:
& 3hs ,3hsp ,3hd ,3hf ,3hg , =20
1
Warning: Extension: Conversion from HOLLERITH to INTEGER(4) at (1)
basprt.f:22.23:
& 3hs ,3hsp ,3hd ,3hf ,3hg , =20
1
Warning: Extension: Conversion from HOLLERITH to INTEGER(4) at (1)
basprt.f:22.29:
& 3hs ,3hsp ,3hd ,3hf ,3hg , =20
1
Warning: Extension: Conversion from HOLLERITH to INTEGER(4) at (1)
basprt.f:22.35:
& 3hs ,3hsp ,3hd ,3hf ,3hg , =20
1
Warning: Extension: Conversion from HOLLERITH to INTEGER(4) at (1)
basprt.f:22.41:
& 3hs ,3hsp ,3hd ,3hf ,3hg , =20
1
Warning: Extension: Conversion from HOLLERITH to INTEGER(4) at (1)
basprt.f:22.47:
& 3hs ,3hsp ,3hd ,3hf ,3hg , =20
1
Warning: Extension: Conversion from HOLLERITH to INTEGER(4) at (1)
basprt.f:23.23:
& 3hs ,3hsp ,3hd ,3hf ,3hg / =20
1
Warning: Extension: Conversion from HOLLERITH to INTEGER(4) at (1)
basprt.f:23.29:
& 3hs ,3hsp ,3hd ,3hf ,3hg / =20
1
Warning: Extension: Conversion from HOLLERITH to INTEGER(4) at (1)
basprt.f:23.35:
& 3hs ,3hsp ,3hd ,3hf ,3hg / =20
1
Warning: Extension: Conversion from HOLLERITH to INTEGER(4) at (1)
basprt.f:23.41:
& 3hs ,3hsp ,3hd ,3hf ,3hg / =20
1
Warning: Extension: Conversion from HOLLERITH to INTEGER(4) at (1)
basprt.f:23.47:
& 3hs ,3hsp ,3hd ,3hf ,3hg / =20
1
Warning: Extension: Conversion from HOLLERITH to INTEGER(4) at (1)
gfortran42 -O -malign-double -c calc.f
gfortran42 -O -malign-double -c caldis.f
gfortran42 -O -malign-double -c calfa.f
gfortran42 -O -malign-double -c cntour.f
gfortran42 -O -malign-double -c cnvgam.f
gfortran42 -O -malign-double -c cnvgau.f
gfortran42 -O -malign-double -c convzmat.f
gfortran42 -O -malign-double -c cross.f
gfortran42 -O -malign-double -c crprod.f
gfortran42 -O -malign-double -c datin.f
gfortran42 -O -malign-double -c defpc.f
gfortran42 -O -malign-double -c defrad.f
gfortran42 -O -malign-double -c del.f
gfortran42 -O -malign-double -c denmak.f
gfortran42 -O -malign-double -c densmat.f
gfortran42 -O -malign-double -c distot.f
gfortran42 -O -malign-double -c dmat.f
gfortran42 -O -malign-double -c docent.f
gfortran42 -O -malign-double -c draw.f
gfortran42 -O -malign-double -c euler.f
gfortran42 -O -malign-double -c eulerh.f
gfortran42 -O -malign-double -c files.f
gfortran42 -O -malign-double -c fndcal.f
gfortran42 -O -malign-double -c gampoi.f
gfortran42 -O -malign-double -c gaupoi.f
gfortran42 -O -malign-double -c gaussian.f
gfortran42 -O -malign-double -c geogam.f
gfortran42 -O -malign-double -c geogau.f
gfortran42 -O -malign-double -c getmul.f
gfortran42 -O -malign-double -c getpoi.f
gfortran42 -O -malign-double -c getreal.f
gfortran42 -O -malign-double -c gmmcnv.f
gfortran42 -O -malign-double -c grdcal.f
gfortran42 -O -malign-double -c gstr.f
gfortran42 -O -malign-double -c hidedr.f
gfortran42 -O -malign-double -c impsc.f
gfortran42 -O -malign-double -c locatc.f
gfortran42 -O -malign-double -c maxmin.f
gfortran42 -O -malign-double -c mdout.f
gfortran42 -O -malign-double -c mmcnv.f
gfortran42 -O -malign-double -c mopaco.f
gfortran42 -O -malign-double -c mopin.f
gfortran42 -O -malign-double -c mulprt.f
gfortran42 -O -malign-double -c occin.f
gfortran42 -O -malign-double -c oriin.f
gfortran42 -O -malign-double -c parang.f
gfortran42 -O -malign-double -c pareul.f
gfortran42 -O -malign-double -c parfc.f
gfortran42 -O -malign-double -c parori.f
gfortran42 -O -malign-double -c parpla.f
gfortran42 -O -malign-double -c parstp.f
gfortran42 -O -malign-double -c planky.f
gfortran42 -O -malign-double -c plend.f
gfortran42 -O -malign-double -c plini.f
gfortran42 -O -malign-double -c plmol.f
gfortran42 -O -malign-double -c plotgh.f
gfortran42 -O -malign-double -c plotgr.f
plotgr.f:71.72:
if (iplot.eq.0) assign 20 to istmnt =20
1
Warning: Obsolete: ASSIGN statement at (1)
plotgr.f:72.72:
if (iplot.eq.1) assign 40 to istmnt =20
1
Warning: Obsolete: ASSIGN statement at (1)
plotgr.f:73.72:
if (iplot.eq.2) assign 60 to istmnt =20
1
Warning: Obsolete: ASSIGN statement at (1)
plotgr.f:74.72:
if (iplot.eq.4) assign 100 to istmnt =20
1
Warning: Obsolete: ASSIGN statement at (1)
plotgr.f:76.72:
if (iplot.eq.0) assign 10 to istmnt =20
1
Warning: Obsolete: ASSIGN statement at (1)
plotgr.f:77.72:
if (iplot.eq.1) assign 30 to istmnt =20
1
Warning: Obsolete: ASSIGN statement at (1)
plotgr.f:78.72:
if (iplot.eq.2) assign 50 to istmnt =20
1
Warning: Obsolete: ASSIGN statement at (1)
plotgr.f:79.72:
if (iplot.eq.4) assign 90 to istmnt =20
1
Warning: Obsolete: ASSIGN statement at (1)
plotgr.f:81.47:
if (iplot.eq.0.or.iplot.eq.1) write(iun4,istmnt)dx,dy =20
1
Warning: Obsolete: ASSIGNED variable in FORMAT tag at (1)
plotgr.f:83.19:
write(iun4,istmnt)char(27),int(dx*389),int(dy*389) =20
1
Warning: Obsolete: ASSIGNED variable in FORMAT tag at (1)
plotgr.f:120.19:
write(iun4,istmnt)int(dx*2000),int(dy*2000)+125 =20
1
Warning: Obsolete: ASSIGNED variable in FORMAT tag at (1)
gfortran42 -O -malign-double -c plotin.f
gfortran42 -O -malign-double -c plpost.f
gfortran42 -O -malign-double -c prev.f
gfortran42 -O -malign-double -c proato.f
gfortran42 -O -malign-double -c procnv.f
gfortran42 -O -malign-double -c progeo.f
gfortran42 -O -malign-double -c rdbas.f
gfortran42 -O -malign-double -c rdcor.f
gfortran42 -O -malign-double -c rdgam.f
gfortran42 -O -malign-double -c rdgaus.f
gfortran42 -O -malign-double -c rdinfo.f
gfortran42 -O -malign-double -c rdpdb.f
gfortran42 -O -malign-double -c rdvect.f
gfortran42 -O -malign-double -c reada.f
gfortran42 -O -malign-double -c readel.f
gfortran42 -O -malign-double -c readvv.f
gfortran42 -O -malign-double -c renorm.f
gfortran42 -O -malign-double -c rmomen.f
gfortran42 -O -malign-double -c rota.f
gfortran42 -O -malign-double -c rotatg.f
gfortran42 -O -malign-double -c rotb.f
gfortran42 -O -malign-double -c rotc.f
gfortran42 -O -malign-double -c rotcor.f
gfortran42 -O -malign-double -c rotd.f
gfortran42 -O -malign-double -c rotfir.f
gfortran42 -O -malign-double -c rotm.f
gfortran42 -O -malign-double -c rotmom.f
gfortran42 -O -malign-double -c scback.f
gfortran42 -O -malign-double -c search.f
gfortran42 -O -malign-double -c searchd.f
gfortran42 -O -malign-double -c setang.f
gfortran42 -O -malign-double -c setbas.f
gfortran42 -O -malign-double -c settc.f
gfortran42 -O -malign-double -c shsort.f
gfortran42 -O -malign-double -c site.f
gfortran42 -O -malign-double -c slater.f
gfortran42 -O -malign-double -c stoc.f
gfortran42 -O -malign-double -c tessa.f
gfortran42 -O -malign-double -c tk4014.f
gfortran42 -O -malign-double -c tocap.f
gfortran42 -O -malign-double -c tocapf.f
gfortran42 -O -malign-double -c tomold.f
gfortran42 -O -malign-double -c under.f
gfortran42 -O -malign-double -c vaxdum.f
gfortran42 -O -malign-double -c vclr.f
gfortran42 -O -malign-double -c vec.f
gfortran42 -O -malign-double -c vlen.f
gfortran42 -O -malign-double -c vsc1.f
gfortran42 -O -malign-double -c wrinfo.f
gfortran42 -O -malign-double -c zread.f
gfortran42 -O -malign-double -c samino.f
gfortran42 -O -malign-double -c prtcal.f
gfortran42 -O -malign-double -c actss.f
gfortran42 -O -malign-double -c actami.f
gfortran42 -O -malign-double -c plden.f
gfortran42 -O -malign-double -c heaps.f
gfortran42 -O -malign-double -c den3d.f
gfortran42 -O -malign-double -c dencnt.f
gfortran42 -O -malign-double -c plhead.f
gfortran42 -O -malign-double -c pltab.f
gfortran42 -O -malign-double -c eucmol.f
gfortran42 -O -malign-double -c pl3dm.f
gfortran42 -O -malign-double -c plbox.f
gfortran42 -O -malign-double -c selsol.f
gfortran42 -O -malign-double -c atmd.f
gfortran42 -O -malign-double -c dolift.f
gfortran42 -O -malign-double -c spaced.f
gfortran42 -O -malign-double -c snypnt.f
gfortran42 -O -malign-double -c eulstr.f
gfortran42 -O -malign-double -c calct.f
gfortran42 -O -malign-double -c coeffs.f
gfortran42 -O -malign-double -c epint.f
gfortran42 -O -malign-double -c espot.f
gfortran42 -O -malign-double -c fcij.f
gfortran42 -O -malign-double -c fmt.f
gfortran42 -O -malign-double -c genaos.f
gfortran42 -O -malign-double -c rys.f
gfortran42 -O -malign-double -c ryspol.f
gfortran42 -O -malign-double -c rysrot.f
gfortran42 -O -malign-double -c thrcen.f
gfortran42 -O -malign-double -c twocen.f
gfortran42 -O -malign-double -c ifblen.f
gfortran42 -O -malign-double -c rott.f
gfortran42 -O -malign-double -c plmolp.f
gfortran42 -O -malign-double -c wrzmat.f
gfortran42 -O -malign-double -c rdchx.f
rdchx.f:1606.72:
assign 1070 to istmnt =20
1
Warning: Obsolete: ASSIGN statement at (1)
rdchx.f:1609.72:
assign 1075 to istmnt =20
1
Warning: Obsolete: ASSIGN statement at (1)
rdchx.f:1624.19:
read(iun2,istmnt,end=3D1000,err=3D1000) (icon(i),i=3D1,jleft) =
=20
1
Warning: Obsolete: ASSIGNED variable in FORMAT tag at (1)
gfortran42 -O -malign-double -c obin.f
gfortran42 -O -malign-double -c pred.f
gfortran42 -O -malign-double -c gargpl.f
gfortran42 -O -malign-double -c inferr.f
gfortran42 -O -malign-double -c freqs.f
gfortran42 -O -malign-double -c getmop.f
gfortran42 -O -malign-double -c brklin.f
gfortran42 -O -malign-double -c getzm.f
gfortran42 -O -malign-double -c xyzcoo.f
gfortran42 -O -malign-double -c geomop.f
gfortran42 -O -malign-double -c dumzm.f
gfortran42 -O -malign-double -c getxyz.f
gfortran42 -O -malign-double -c espchrg.f
gfortran42 -O -malign-double -c proxim.f
gfortran42 -O -malign-double -c rdgamu.f
gfortran42 -O -malign-double -c plvrml.f
gfortran42 -O -malign-double -c molsint.f
gfortran42 -O -malign-double -c runjob.f
gfortran42 -O -malign-double -c rdmsf.f
gfortran42 -O -malign-double -c wrmsf.f
gfortran42 -O -malign-double -c rdmolf.f
gfortran42 -O -malign-double -c adf_fun.f
gfortran42 -O -malign-double -c rotpol.f
gfortran42 -O -malign-double -c extbas.f
gfortran42 -O -malign-double -c rdcpmd.f
gfortran42 -O -malign-double -c eem.f
eem.f:673.72:
10 assign 30 to next =20
1
Warning: Obsolete: ASSIGN statement at (1)
eem.f:678.19:
20 go to next,(30, 50, 70, 110) =20
1
Warning: Obsolete: Assigned GOTO statement at (1)
eem.f:680.72:
assign 50 to next =20
1
Warning: Obsolete: ASSIGN statement at (1)
eem.f:689.72:
assign 70 to next =20
1
Warning: Obsolete: ASSIGN statement at (1)
eem.f:695.72:
assign 110 to next =20
1
Warning: Obsolete: ASSIGN statement at (1)
gfortran42 -O -malign-double -c asspmf.f
gfortran42 -O -malign-double -c srfcal.f
gfortran42 -O -malign-double -c rdqchm.f
gfortran42 -O -malign-double -c mpdum.f
cc -O -pipe -c -DDOBACK -DHASTIMER -I/usr/local/include -malign-double -c=
xwin.c
gfortran42 -o molden atomdens.o molden.o above.o actcal.o basprt.o calc.o =
caldis.o calfa.o cntour.o cnvgam.o cnvgau.o convzmat.o cross.o crprod.o da=
tin.o defpc.o defrad.o del.o denmak.o densmat.o distot.o dmat.o docent.o d=
raw.o euler.o eulerh.o files.o fndcal.o gampoi.o gaupoi.o gaussian.o geog=
am.o geogau.o getmul.o getpoi.o getreal.o gmmcnv.o grdcal.o gstr.o hidedr.=
o impsc.o locatc.o maxmin.o mdout.o mmcnv.o mopaco.o mopin.o mulprt.o occi=
n.o oriin.o parang.o pareul.o parfc.o parori.o parpla.o parstp.o planky.o =
plend.o plini.o plmol.o plotgh.o plotgr.o plotin.o plpost.o prev.o proato.=
o procnv.o progeo.o rdbas.o rdcor.o rdgam.o rdgaus.o rdinfo.o rdpdb.o rdv=
ect.o reada.o readel.o readvv.o renorm.o rmomen.o rota.o rotatg.o rotb.o r=
otc.o rotcor.o rotd.o rotfir.o rotm.o rotmom.o scback.o search.o searchd.o=
setang.o setbas.o settc.o shsort.o site.o slater.o stoc.o tessa.o tk4014.=
o tocap.o tocapf.o tomold.o under.o vaxdum.o vclr.o vec.o vlen.o vsc1.o w=
rinfo.o zread.o samino.o prtcal.o actss.o actami.o plden.o heaps.o den3d.o=
dencnt.o plhead.o pltab.o eucmol.o pl3dm.o plbox.o selsol.o atmd.o dolift=
.o spaced.o snypnt.o eulstr.o calct.o coeffs.o epint.o espot.o fcij.o fmt.=
o genaos.o rys.o ryspol.o rysrot.o thrcen.o twocen.o ifblen.o rott.o plmol=
p.o wrzmat.o rdchx.o obin.o pred.o gargpl.o inferr.o freqs.o getmop.o brk=
lin.o getzm.o xyzcoo.o geomop.o dumzm.o getxyz.o espchrg.o proxim.o rdgamu=
.o plvrml.o molsint.o runjob.o rdmsf.o wrmsf.o rdmolf.o adf_fun.o rotpol.o=
extbas.o rdcpmd.o eem.o asspmf.o srfcal.o rdqchm.o mpdum.o xwin.o -L/usr=
/local/lib -lX11 -lm
/usr/bin/ld: molden: hidden symbol `__eprintf' in /usr/local/lib/gcc-4.2.1/=
gcc/i386-portbld-freebsd5.5/4.2.1/libgcc.a(_eprintf.o) is referenced by DSO
collect2: ld returned 1 exit status
*** Error code 1
Stop in /usr2/ports/biology/molden/work/molden4.5.
*** Error code 1
Stop in /usr2/ports/biology/molden.
--ew6BAiZeqk4r7MaW--
Want to link to this message? Use this URL: <https://mail-archive.FreeBSD.org/cgi/mid.cgi?20070816165934.GA59025>