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Bacon" Date: Sat, 7 Nov 2020 13:47:41 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r554390 - in head/biology/bowtie2: . files X-SVN-Group: ports-head X-SVN-Commit-Author: jwb X-SVN-Commit-Paths: in head/biology/bowtie2: . files X-SVN-Commit-Revision: 554390 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-all@freebsd.org X-Mailman-Version: 2.1.34 Precedence: list List-Id: SVN commit messages for the ports tree List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sat, 07 Nov 2020 13:47:42 -0000 Author: jwb Date: Sat Nov 7 13:47:41 2020 New Revision: 554390 URL: https://svnweb.freebsd.org/changeset/ports/554390 Log: biology/bowtie2: Upgrade to 2.4.2 Minor bug fix release Reported by: portscout Modified: head/biology/bowtie2/Makefile head/biology/bowtie2/distinfo head/biology/bowtie2/files/patch-Makefile Modified: head/biology/bowtie2/Makefile ============================================================================== --- head/biology/bowtie2/Makefile Sat Nov 7 12:02:11 2020 (r554389) +++ head/biology/bowtie2/Makefile Sat Nov 7 13:47:41 2020 (r554390) @@ -2,8 +2,7 @@ PORTNAME= bowtie2 DISTVERSIONPREFIX= v -DISTVERSION= 2.4.1 -PORTREVISION= 2 +DISTVERSION= 2.4.2 CATEGORIES= biology perl5 python MAINTAINER= jwb@FreeBSD.org Modified: head/biology/bowtie2/distinfo ============================================================================== --- head/biology/bowtie2/distinfo Sat Nov 7 12:02:11 2020 (r554389) +++ head/biology/bowtie2/distinfo Sat Nov 7 13:47:41 2020 (r554390) @@ -1,3 +1,3 @@ -TIMESTAMP = 1583075948 -SHA256 (BenLangmead-bowtie2-v2.4.1_GH0.tar.gz) = 9fb25513886bf294217dd9c5ca26d18dd5e02e0ae999935ac7ba5700befc492e -SIZE (BenLangmead-bowtie2-v2.4.1_GH0.tar.gz) = 10588621 +TIMESTAMP = 1604617529 +SHA256 (BenLangmead-bowtie2-v2.4.2_GH0.tar.gz) = ea33a1562faf759b21b3a905e20b87a3524ac4e53af8cd723d9a9f31ee159c8a +SIZE (BenLangmead-bowtie2-v2.4.2_GH0.tar.gz) = 10590144 Modified: head/biology/bowtie2/files/patch-Makefile ============================================================================== --- head/biology/bowtie2/files/patch-Makefile Sat Nov 7 12:02:11 2020 (r554389) +++ head/biology/bowtie2/files/patch-Makefile Sat Nov 7 13:47:41 2020 (r554390) @@ -1,7 +1,16 @@ ---- Makefile.orig 2020-03-01 15:16:08 UTC +--- Makefile.orig 2020-11-05 23:04:50 UTC +++ Makefile -@@ -200,22 +200,22 @@ endif +@@ -24,7 +24,7 @@ + PREFIX := /usr/local + bindir := $(PREFIX)/bin +-ARCH := $(shell uname -m) ++ARCH := $(shell uname -p) + LDLIBS := -lz + GCC_PREFIX := $(shell dirname `which gcc`) + GCC_SUFFIX := +@@ -201,22 +201,22 @@ endif + BITS := 32 SSE_FLAG := -msse2 -ifeq (x86_64,$(shell uname -m)) @@ -14,17 +23,17 @@ +else ifeq (aarch64,$(shell uname -p)) BITS := 64 SSE_FLAG := - CXXFLAGS := -fopenmp-simd - CPPFLAGS := -Ithird_party/simde + CXXFLAGS += -fopenmp-simd + CPPFLAGS += -Ithird_party/simde -else ifeq (s390x,$(shell uname -m)) +else ifeq (s390x,$(shell uname -p)) BITS := 64 SSE_FLAG := - CXXFLAGS := -fopenmp-simd - CPPFLAGS := -Ithird_party/simde + CXXFLAGS += -fopenmp-simd + CPPFLAGS += -Ithird_party/simde SANITIZER_FLAGS := -else ifeq (ppc64le,$(shell uname -m)) +else ifeq (ppc64le,$(shell uname -p)) BITS := 64 SSE_FLAG := - CXXFLAGS := -fopenmp-simd + CXXFLAGS += -fopenmp-simd