Date: Fri, 09 Feb 2007 18:04:18 +0900 (JST) From: Maho NAKATA <chat95@mac.com> To: rpvoland@facstaff.wisc.edu Cc: vdemart1@tin.it, freebsd-ports@freebsd.org Subject: Re: math/R eats up all. Message-ID: <20070209.180418.85375367.chat95@mac.com> In-Reply-To: <20070209.154656.63087958.chat95@mac.com> References: <45B8CBFB.6090001@facstaff.wisc.edu> <20070126.113458.35660495.chat95@mac.com> <20070209.154656.63087958.chat95@mac.com>
next in thread | previous in thread | raw e-mail | index | archive | help
Hi all,
Futher investigation, if we select libgoto, configure doesn't use
-lalapack -lcblas; fall back to internal lapack.
So - Following patch worked for me (PentiumM).
Index: Makefile
===================================================================
RCS file: /home/pcvs/ports/math/R/Makefile,v
retrieving revision 1.57
diff -u -r1.57 Makefile
--- Makefile 25 Jan 2007 17:56:40 -0000 1.57
+++ Makefile 9 Feb 2007 09:00:45 -0000
@@ -72,7 +72,9 @@
.if defined(WITH_ATLAS)
LIB_DEPENDS+= atlas.2:${PORTSDIR}/math/atlas
-CONFIGURE_ARGS+=--with-lapack="-lalapack -lcblas" --with-blas="-lf77blas"
+#CONFIGURE_ARGS+=--with-lapack="-lalapack -lcblas" --with-blas="-lf77blas -latlas"
+CONFIGURE_ARGS+= --with-blas="-lf77blas -latlas"
+#CONFIGURE_ARGS+= --with-blas="-lgoto"
PLIST_SUB+= BLAS="@comment "
.else
LIB_DEPENDS+= blas.2:${PORTSDIR}/math/blas
Guilty part is `-lalapack and -lcblas'
Another investigation:
PentiumM(i386)+atlas hangs up following part
---
@echo "tools:::makeLazyLoading(\"$(pkg)\")" | \
R_DEFAULT_PACKAGES=NULL LC_COLLATE=C $(R_EXE) --slave > /dev/null
--
what is makeLazyLoading? I have no idea.
thanks,
-- NAKATA, Maho (maho@FreeBSD.org)
Want to link to this message? Use this URL: <https://mail-archive.FreeBSD.org/cgi/mid.cgi?20070209.180418.85375367.chat95>