From owner-svn-ports-head@freebsd.org Thu Jan 14 15:51:19 2021 Return-Path: Delivered-To: svn-ports-head@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id DCAA24E65B1; Thu, 14 Jan 2021 15:51:19 +0000 (UTC) (envelope-from jwb@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4DGph74zynz4Xnx; Thu, 14 Jan 2021 15:51:19 +0000 (UTC) (envelope-from jwb@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 9D7134C8E; Thu, 14 Jan 2021 15:51:19 +0000 (UTC) (envelope-from jwb@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id 10EFpJx3084807; Thu, 14 Jan 2021 15:51:19 GMT (envelope-from jwb@FreeBSD.org) Received: (from jwb@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id 10EFpJqW084806; Thu, 14 Jan 2021 15:51:19 GMT (envelope-from jwb@FreeBSD.org) Message-Id: <202101141551.10EFpJqW084806@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: jwb set sender to jwb@FreeBSD.org using -f From: "Jason W. Bacon" Date: Thu, 14 Jan 2021 15:51:19 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r561567 - head/biology/haplohseq X-SVN-Group: ports-head X-SVN-Commit-Author: jwb X-SVN-Commit-Paths: head/biology/haplohseq X-SVN-Commit-Revision: 561567 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-head@freebsd.org X-Mailman-Version: 2.1.34 Precedence: list List-Id: SVN commit messages for the ports tree for head List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Thu, 14 Jan 2021 15:51:20 -0000 Author: jwb Date: Thu Jan 14 15:51:19 2021 New Revision: 561567 URL: https://svnweb.freebsd.org/changeset/ports/561567 Log: biology/haplohseq: Resurrect and fix python2 dependency Move upstream to Github fork Added: head/biology/haplohseq/ - copied from r517828, head/biology/haplohseq/ Modified: head/biology/haplohseq/Makefile head/biology/haplohseq/distinfo Modified: head/biology/haplohseq/Makefile ============================================================================== --- head/biology/haplohseq/Makefile Sun Nov 17 15:00:13 2019 (r517828) +++ head/biology/haplohseq/Makefile Thu Jan 14 15:51:19 2021 (r561567) @@ -2,9 +2,8 @@ PORTNAME= haplohseq DISTVERSION= 0.1.2 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= biology -MASTER_SITES= https://acadix.biz/Ports/distfiles/ MAINTAINER= jwb@FreeBSD.org COMMENT= Identify regions of allelic imbalance @@ -14,7 +13,10 @@ LICENSE= MIT LIB_DEPENDS= libboost_system.so:devel/boost-libs RUN_DEPENDS= R-cran-optparse>0:devel/R-cran-optparse -USES= compiler:c++11-lang gmake localbase:ldflags python:2.7 tar:xz +USES= compiler:c++11-lang gmake localbase:ldflags python +USE_GITHUB= yes + +GH_ACCOUNT= outpaddling OPTIONS_DEFINE= EXAMPLES Modified: head/biology/haplohseq/distinfo ============================================================================== --- head/biology/haplohseq/distinfo Sun Nov 17 15:00:13 2019 (r517828) +++ head/biology/haplohseq/distinfo Thu Jan 14 15:51:19 2021 (r561567) @@ -1,3 +1,3 @@ -TIMESTAMP = 1573660978 -SHA256 (haplohseq-0.1.2.tar.xz) = 0e7474f6af6b41c4b38f5f4549344714ec022e2adfc4aa9d00e0d420483e260a -SIZE (haplohseq-0.1.2.tar.xz) = 8108896 +TIMESTAMP = 1589733633 +SHA256 (outpaddling-haplohseq-0.1.2_GH0.tar.gz) = 64f61023a6795decb680c23d142b1a349988d4c0e3bef8c7d52ca33bf42f29f0 +SIZE (outpaddling-haplohseq-0.1.2_GH0.tar.gz) = 12084603