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Bacon" Date: Sun, 24 Mar 2019 19:40:26 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r496770 - in head/biology: . py-dnaio X-SVN-Group: ports-head X-SVN-Commit-Author: jwb X-SVN-Commit-Paths: in head/biology: . py-dnaio X-SVN-Commit-Revision: 496770 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-Rspamd-Queue-Id: CEDFD939DC X-Spamd-Bar: -- Authentication-Results: mx1.freebsd.org X-Spamd-Result: default: False [-2.96 / 15.00]; local_wl_from(0.00)[FreeBSD.org]; NEURAL_HAM_MEDIUM(-1.00)[-0.999,0]; NEURAL_HAM_SHORT(-0.96)[-0.963,0]; ASN(0.00)[asn:11403, ipnet:2610:1c1:1::/48, country:US]; NEURAL_HAM_LONG(-1.00)[-1.000,0] X-BeenThere: svn-ports-all@freebsd.org X-Mailman-Version: 2.1.29 Precedence: list List-Id: SVN commit messages for the ports tree List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sun, 24 Mar 2019 19:40:28 -0000 Author: jwb Date: Sun Mar 24 19:40:26 2019 New Revision: 496770 URL: https://svnweb.freebsd.org/changeset/ports/496770 Log: biology/py-dnaio: Read and write FASTQ and FASTA Factored out of py-cutadapt Reviewed by: jrm Added: head/biology/py-dnaio/ head/biology/py-dnaio/Makefile (contents, props changed) head/biology/py-dnaio/distinfo (contents, props changed) head/biology/py-dnaio/pkg-descr (contents, props changed) Modified: head/biology/Makefile Modified: head/biology/Makefile ============================================================================== --- head/biology/Makefile Sun Mar 24 18:44:12 2019 (r496769) +++ head/biology/Makefile Sun Mar 24 19:40:26 2019 (r496770) @@ -113,6 +113,7 @@ SUBDIR += py-biopython SUBDIR += py-bx-python SUBDIR += py-cutadapt + SUBDIR += py-dnaio SUBDIR += py-fastTSNE SUBDIR += py-gffutils SUBDIR += py-gtfparse Added: head/biology/py-dnaio/Makefile ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/py-dnaio/Makefile Sun Mar 24 19:40:26 2019 (r496770) @@ -0,0 +1,18 @@ +# $FreeBSD$ + +PORTNAME= dnaio +DISTVERSION= 0.3 +CATEGORIES= biology python +MASTER_SITES= CHEESESHOP +PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} + +MAINTAINER= jwb@FreeBSD.org +COMMENT= Read and write FASTQ and FASTA + +LICENSE= MIT +LICENSE_FILE= ${WRKSRC}/LICENSE + +USES= python:3.4+ +USE_PYTHON= autoplist distutils + +.include Added: head/biology/py-dnaio/distinfo ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/py-dnaio/distinfo Sun Mar 24 19:40:26 2019 (r496770) @@ -0,0 +1,3 @@ +TIMESTAMP = 1553347181 +SHA256 (dnaio-0.3.tar.gz) = 47e4449affad0981978fe986684fc0d9c39736f05a157f6cf80e54dae0a92638 +SIZE (dnaio-0.3.tar.gz) = 138098 Added: head/biology/py-dnaio/pkg-descr ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/py-dnaio/pkg-descr Sun Mar 24 19:40:26 2019 (r496770) @@ -0,0 +1,5 @@ +dnaio is a Python 3 library for fast parsing of FASTQ and also FASTA files. The +code was previously part of the cutadapt tool and has been improved since it +has been split out. + +WWW: https://pypi.python.org/pypi/dnaio