From nobody Sun May 14 17:11:01 2023 X-Original-To: dev-commits-ports-all@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4QK8Cn2Kh7z4Btmm; Sun, 14 May 2023 17:11:01 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4QK8Cn1bykz3CYd; Sun, 14 May 2023 17:11:01 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1684084261; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=CYF8SB+Nm744razQVYTdVxtXm+fY49Ci+G8J5pS5ZxY=; b=maQKtZyQA/wcxOTGby+ix/jPwbI5FfMroUe1tCmHmmVLZD7YL6pkye937Om2OlIsESeslU wT+b/LJhoRskQ8i7xKqhQ64bTTnHYOBFvd3PIxYnXAGxxBM6NKf6MqtWxLq5ZJNO7f5X5f n+ND5iF0U5AGE27hB5GAu7iG8PXnnUe/9EZqvjQKP1jmG+K8FPGw14ksAnDoVTq8s/bLd+ w4cbY8/hWOUJJEbEqO8VjR5EBa3jTeXxLDzJjwdYeTQ5gP9wappVsrlEXkGOoHpfN7FyAW vzMFsznaGiHW3lVQWMO+guSR85K+287awLSsP4S8zDz4ECebjAXeWPk85Q+a8A== ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1684084261; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=CYF8SB+Nm744razQVYTdVxtXm+fY49Ci+G8J5pS5ZxY=; b=PfxkK07WJ5zJuqkvltsNhD8fUvxOnNreg3YzQFqaZs4kf34iAmmIhRYEAbIHKPjLjx0sS3 LTRbSIzWvgLiCyEw6Gy+t7BSdMLElqrA8S+vfdDC8xvxvIkNmrnECFXJbAhX8/qGN+gwIO K54Fjnito6y8pjW71FJ+4rIjuXxMqvBjSD6NrDxDOwZGGPr07+iHYqUBb2UrbSNH76iYvF NxVUEUbg1h3iu+/7FvWeHt8NUkckGZfcZxT6EfbG4t9DzzUwJ64hUlcczJPu8rDb+BnnkH nP9anV8/RKsJfw27/j5JGtuKRFHxCFHeHTQPznbADYTZqHP56aH0cEwBb0ukDQ== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1684084261; a=rsa-sha256; cv=none; b=csYxv44dOORU8FTV6I2SxuDkBvZJ9XqbUTMxTMU5J++ypfH9StQEEERi8PJLRhgAH9aB9T /uG4qbt4qI5AxK3FTNN7mgEzFLNM326+CkdISG7k7lpF7qMABqz8BOp6EjE1Jf3PRH/mI0 WRK/36UTEHdQ5jG16VaAyeNlGTkj4LmUsL37rc54fedW56YZ6WieDej+ifqcy/dUlM1g5u Jv3MM45OUojk/XUXMrcqdGnbCK3s/cT9Lti3Njej91UWoMF9XeM6LXvwN3v9Hapm59M2Cl JMCpPdjtqj0W3LGWiSp0GEUvosIVF7rYW8AGnfCYzpHDHVJ2oW7wO17QmHp80Q== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4QK8Cn0gdBz16Lg; Sun, 14 May 2023 17:11:01 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 34EHB1w3044781; Sun, 14 May 2023 17:11:01 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 34EHB1CN044780; Sun, 14 May 2023 17:11:01 GMT (envelope-from git) Date: Sun, 14 May 2023 17:11:01 GMT Message-Id: <202305141711.34EHB1CN044780@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: 4d258e203e82 - main - biology/fastp: Update to 0.23.3 List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-all@freebsd.org X-BeenThere: dev-commits-ports-all@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 4d258e203e82516725e3b1c3f96a531572265861 Auto-Submitted: auto-generated X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=4d258e203e82516725e3b1c3f96a531572265861 commit 4d258e203e82516725e3b1c3f96a531572265861 Author: Jason W. Bacon AuthorDate: 2023-05-14 17:10:10 +0000 Commit: Jason W. Bacon CommitDate: 2023-05-14 17:10:10 +0000 biology/fastp: Update to 0.23.3 Fix hang on bad input and a few other bugs Changes: https://github.com/OpenGene/fastp/releases Reported by: portscout --- biology/fastp/Makefile | 5 +++-- biology/fastp/distinfo | 6 +++--- 2 files changed, 6 insertions(+), 5 deletions(-) diff --git a/biology/fastp/Makefile b/biology/fastp/Makefile index b07db20d2c15..42720400d7f0 100644 --- a/biology/fastp/Makefile +++ b/biology/fastp/Makefile @@ -1,7 +1,6 @@ PORTNAME= fastp DISTVERSIONPREFIX= v -DISTVERSION= 0.23.2 -PORTREVISION= 2 +DISTVERSION= 0.23.3 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org @@ -16,6 +15,8 @@ LIB_DEPENDS= libdeflate.so:archivers/libdeflate \ USES= gmake localbase:ldflags USE_GITHUB= yes +# FIXME: Neglected to document what gcc is needed. +# Investigate and remove if possible. USE_GCC= yes GH_ACCOUNT= OpenGene diff --git a/biology/fastp/distinfo b/biology/fastp/distinfo index bc2814e0b51e..bbad3e93cd45 100644 --- a/biology/fastp/distinfo +++ b/biology/fastp/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1640881282 -SHA256 (OpenGene-fastp-v0.23.2_GH0.tar.gz) = 185bd58732e57474fa08aae90e154fbc05f3e437ee2b434386dd2266d60d8ef6 -SIZE (OpenGene-fastp-v0.23.2_GH0.tar.gz) = 163203 +TIMESTAMP = 1684079755 +SHA256 (OpenGene-fastp-v0.23.3_GH0.tar.gz) = a37ee4b5dcf836a5a19baec645657b71d9dcd69ee843998f41f921e9b67350e3 +SIZE (OpenGene-fastp-v0.23.3_GH0.tar.gz) = 164057