From owner-freebsd-questions@freebsd.org Thu Mar 12 19:09:37 2020 Return-Path: Delivered-To: freebsd-questions@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id 4F99C268DC5 for ; Thu, 12 Mar 2020 19:09:37 +0000 (UTC) (envelope-from galtsev@kicp.uchicago.edu) Received: from kicp.uchicago.edu (kicp.uchicago.edu [128.135.20.70]) by mx1.freebsd.org (Postfix) with ESMTP id 48ddg356sMz3FPx for ; Thu, 12 Mar 2020 19:09:35 +0000 (UTC) (envelope-from galtsev@kicp.uchicago.edu) Received: from point.uchicago.edu (point.uchicago.edu [128.135.52.6]) (Authenticated sender: galtsev) by kicp.uchicago.edu (Postfix) with ESMTPSA id 019DE4E680 for ; Thu, 12 Mar 2020 14:09:33 -0500 (CDT) Subject: Re: "directory not empty", "no such file or directory" errors on upgrade To: freebsd-questions@freebsd.org References: From: Valeri Galtsev Message-ID: <94e006d9-bf6e-52e2-c667-763385cdd98e@kicp.uchicago.edu> Date: Thu, 12 Mar 2020 14:09:33 -0500 User-Agent: Mozilla/5.0 (X11; FreeBSD amd64; rv:68.0) Gecko/20100101 Thunderbird/68.5.0 MIME-Version: 1.0 In-Reply-To: Content-Type: text/plain; charset=utf-8; format=flowed Content-Language: en-US Content-Transfer-Encoding: 8bit X-Rspamd-Queue-Id: 48ddg356sMz3FPx X-Spamd-Bar: / Authentication-Results: mx1.freebsd.org; dkim=none; dmarc=fail reason="No valid SPF, No valid DKIM" header.from=uchicago.edu (policy=none); spf=none (mx1.freebsd.org: domain of galtsev@kicp.uchicago.edu has no SPF policy when checking 128.135.20.70) smtp.mailfrom=galtsev@kicp.uchicago.edu X-Spamd-Result: default: False [0.97 / 15.00]; ARC_NA(0.00)[]; RCVD_VIA_SMTP_AUTH(0.00)[]; DMARC_POLICY_SOFTFAIL(0.10)[uchicago.edu : No valid SPF, No valid DKIM,none]; FROM_HAS_DN(0.00)[]; TO_MATCH_ENVRCPT_ALL(0.00)[]; MIME_GOOD(-0.10)[text/plain]; PREVIOUSLY_DELIVERED(0.00)[freebsd-questions@freebsd.org]; TO_DN_NONE(0.00)[]; NEURAL_SPAM_MEDIUM(0.60)[0.597,0]; RCPT_COUNT_ONE(0.00)[1]; IP_SCORE(0.11)[ip: (0.33), ipnet: 128.135.0.0/16(0.16), asn: 160(0.13), country: US(-0.05)]; NEURAL_SPAM_LONG(0.16)[0.158,0]; RCVD_IN_DNSWL_NONE(0.00)[70.20.135.128.list.dnswl.org : 127.0.10.0]; R_SPF_NA(0.00)[]; RCVD_NO_TLS_LAST(0.10)[]; FROM_EQ_ENVFROM(0.00)[]; R_DKIM_NA(0.00)[]; MIME_TRACE(0.00)[0:+]; ASN(0.00)[asn:160, ipnet:128.135.0.0/16, country:US]; MID_RHS_MATCH_FROM(0.00)[]; RCVD_COUNT_TWO(0.00)[2] X-BeenThere: freebsd-questions@freebsd.org X-Mailman-Version: 2.1.29 Precedence: list List-Id: User questions List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Thu, 12 Mar 2020 19:09:37 -0000 On 2020-03-12 14:03, Gary Aitken wrote: > Upgrading from 11.2-RELEASE to 11.3-RELEASE > > The final invoke of freebsd-update install completed with the following > messages: > > ///usr/src/sys/pc98/include/acpica_machdep.h  no such file or directory > rmdir: ///usr/src/contrib/ofed/usr.lib        directory not empty > rmdir: ///usr/src/contrib/ofed/usr.bin        directory not empty > rmdir: > ///usr/src/contrib/llvm/tools/lldb/source/Plugins/InstrumentationRuntime/ThreadSanitizer > directory not empty > rmdir: > ///usr/src/contrib/llvm/tools/lldb/source/Plugins/InstrumentationRuntime/AddressSanitizer > directory not empty I would unmount filesystem and run fsck on it first. Valeri > > The upgraded system has no >   /usr/src/sys/pc98/  directory > > The files in >   /usr/src/contrib/ofed/usr.lib >   /usr/src/contrib/ofed/usr.bin > > /usr/src/contrib/llvm/tools/lldb/source/Plugins/InstrumentationRuntime/ThreadSanitizer > > > /usr/src/contrib/llvm/tools/lldb/source/Plugins/InstrumentationRuntime/AddressSanitizer > > > appear to be old versions left over from the original 11.2 install > > Hints on the proper way to fix this? > (The system appears to be running ok so far, I presume because these are > source files and not binaries) > > Thanks, > > Gary > _______________________________________________ > freebsd-questions@freebsd.org mailing list > https://lists.freebsd.org/mailman/listinfo/freebsd-questions > To unsubscribe, send any mail to > "freebsd-questions-unsubscribe@freebsd.org" -- ++++++++++++++++++++++++++++++++++++++++ Valeri Galtsev Sr System Administrator Department of Astronomy and Astrophysics Kavli Institute for Cosmological Physics University of Chicago Phone: 773-702-4247 ++++++++++++++++++++++++++++++++++++++++