From nobody Fri Dec 20 12:05:28 2024 X-Original-To: dev-commits-ports-all@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4YF5hm4WYpz5hs0c; Fri, 20 Dec 2024 12:05:28 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R10" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4YF5hm3BGTz4YNk; Fri, 20 Dec 2024 12:05:28 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1734696328; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=Sx6H5vx6rKUF8TkFV/shV3iyU6/a/R4EI0GSHVIGPeM=; b=P6VuVC1FXgf0AkIWbxU42PxftBAvPkPTkZzYoVRna0NLvg635soKXzNJqTNguMFi0P+qM3 WZXcZNvEc0TA/0/2mWNNN+rFKO9ar4xR81qSTGfZoQNmTLM2e03WtPEa+kZUOrWLxmnz1C nCLi+O/J4P7wlvJ9IyHQIu4Hq07u6O50eta4erqse8qoBvkpXYNfoRoXJ/B7PRemteqpWP sSQl0bd7rPG05k9aakASe5IuJCFb2MaKAYafX4fgkylNe6tuNcWaC/2uTU9PNlkg9sl0eO LBPONs7o9K9/qTPqU/0afGz92xkjH+MY4afeFUuh6/4lojlR5ONQ5/5RtrtXjg== ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1734696328; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=Sx6H5vx6rKUF8TkFV/shV3iyU6/a/R4EI0GSHVIGPeM=; b=sW/8Sgz5uWtzwc1GD8g5m0L2IlUlIBSoPDAhsoQ8zIOhPHSFiQ968yIdWxhLAOwo7iP7L0 Jf353tE7DHF4F9Cy1LZeCsAry8gWQXJfXmRMjPyuBu2Per3mxhjDOKB7ej2V/tAHJ/xfED f8c1vM1BAT46S8GV3kRJY3+ABr69Wyt5HaY1WVhoBryM7lekmEzXwiYnQ8gKhlae2g3t9u lUcYkYsnp/UqGL4oRUZo3C7FaCdp8XqaZbt4HW/7VwiiYQefQmJZJalI3g+kYDmU1dVb+V s/PAKg6Pf2yPHkX7JD0dAvaUh8NcdZiS5DtMF5sHTgLYdR02d9A6hhow7t5Pkw== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1734696328; a=rsa-sha256; cv=none; b=sou2vmbfQw+CCJo6L4fFRAf//NGqdz7hbQHAnWRmu3cC2q85AtQPHgd8muFE/NyJCF7sM0 tIEs9+dkkmJiXOILWit+3XtZGl/S6nYVyqa4yyhMT+yK/uFQD3FOVxP7dCZrplYMTnrF9y 7ds7qqi7YuPiO6BtMwkOCdlm+5BOOqpUgEyIyC/GzkRelW0mqhb5vPDIr7SHsGZQElj4aq yV19Wc+Ga3telUyTPKK7YE6yDt1Y0E3T57odQymX/Zpeq+59y4pXcYypAvSfy4Mjvl9pqp ZT7TSMfz+pwopatLd4ryN5VqVf8Jl3lgPFXwf41kK125e/GS3+2BUJBQHFwFqA== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4YF5hm1VjpzdVQ; Fri, 20 Dec 2024 12:05:28 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.18.1/8.18.1) with ESMTP id 4BKC5SDn015373; Fri, 20 Dec 2024 12:05:28 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.18.1/8.18.1/Submit) id 4BKC5SmH015370; Fri, 20 Dec 2024 12:05:28 GMT (envelope-from git) Date: Fri, 20 Dec 2024 12:05:28 GMT Message-Id: <202412201205.4BKC5SmH015370@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Piotr Kubaj Subject: git: 6970d6fe212a - main - science/rdkit: correct pkg-plist on big-endian, correct ARCH check, enable on i386 List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: X-BeenThere: dev-commits-ports-all@freebsd.org Sender: owner-dev-commits-ports-all@FreeBSD.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: pkubaj X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 6970d6fe212a79715ec754cb753659db83619b2d Auto-Submitted: auto-generated The branch main has been updated by pkubaj: URL: https://cgit.FreeBSD.org/ports/commit/?id=6970d6fe212a79715ec754cb753659db83619b2d commit 6970d6fe212a79715ec754cb753659db83619b2d Author: Piotr Kubaj AuthorDate: 2024-12-19 12:15:23 +0000 Commit: Piotr Kubaj CommitDate: 2024-12-20 12:04:59 +0000 science/rdkit: correct pkg-plist on big-endian, correct ARCH check, enable on i386 1. powerpc64le is also little-endian. 2. There are now less big-endian architectures than little-endian, so revert the check, now also covering powerpc64le. 3. Tested on i386, works fine on 14.2-RELEASE. --- science/rdkit/Makefile | 9 ++++----- science/rdkit/pkg-plist | 2 +- 2 files changed, 5 insertions(+), 6 deletions(-) diff --git a/science/rdkit/Makefile b/science/rdkit/Makefile index b70e9f81c9b2..c44922819a01 100644 --- a/science/rdkit/Makefile +++ b/science/rdkit/Makefile @@ -1,7 +1,7 @@ PORTNAME= rdkit DISTVERSIONPREFIX= Release_ DISTVERSION= 2024_03_6 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= science MASTER_SITES= LOCAL/yuri/:font # unstable, changing font file: https://fonts.google.com/download?family=Comic%20Neue&dummy=/:font DISTFILES= ComicNeue-Regular.ttf:font @@ -15,7 +15,6 @@ WWW= https://www.rdkit.org/ LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/license.txt -BROKEN_i386= non-constant-expression cannot be narrowed from type 'unsigned int' to 'npy_intp', see https://github.com/rdkit/rdkit/issues/4934 BROKEN_FreeBSD_15_aarch64= clang-17 crashes, see https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=272652 BROKEN_FreeBSD_15_amd64= clang-17 crashes, see https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=272652 @@ -75,10 +74,10 @@ PORTDOCS= * .include -.if ${ARCH} == aarch64 || ${ARCH} == amd64 || ${ARCH:Marm*} || ${ARCH} == i386 || ${ARCH:Mmips*el*} || ${ARCH} == riscv -PLIST_SUB+= LITTLE_ENDIAN="" -.else +.if ${ARCH} == powerpc || ${ARCH} == powerpc64 PLIST_SUB+= LITTLE_ENDIAN="@comment " +.else +PLIST_SUB+= LITTLE_ENDIAN="" .endif post-extract: diff --git a/science/rdkit/pkg-plist b/science/rdkit/pkg-plist index eabbfffc1000..4fb73662f59c 100644 --- a/science/rdkit/pkg-plist +++ b/science/rdkit/pkg-plist @@ -720,7 +720,7 @@ lib/libRDKitga.so.1.%%SHLIB_VER%% %%PYTHON%%%%PYTHON_SITELIBDIR%%/rdkit/ML/Cluster/Butina.py %%PYTHON%%%%PYTHON_SITELIBDIR%%/rdkit/ML/Cluster/ClusterUtils.py %%PYTHON%%%%PYTHON_SITELIBDIR%%/rdkit/ML/Cluster/ClusterVis.py -%%PYTHON%%%%PYTHON_SITELIBDIR%%/rdkit/ML/Cluster/Clustering.so +%%LITTLE_ENDIAN%%%%PYTHON%%%%PYTHON_SITELIBDIR%%/rdkit/ML/Cluster/Clustering.so %%PYTHON%%%%PYTHON_SITELIBDIR%%/rdkit/ML/Cluster/Clusters.py %%PYTHON%%%%PYTHON_SITELIBDIR%%/rdkit/ML/Cluster/Murtagh.py %%PYTHON%%%%PYTHON_SITELIBDIR%%/rdkit/ML/Cluster/Resemblance.py