From owner-svn-ports-all@freebsd.org Sat Jun 1 07:40:25 2019 Return-Path: Delivered-To: svn-ports-all@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 1DA1A15BAEE0; Sat, 1 Jun 2019 07:40:25 +0000 (UTC) (envelope-from yuri@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) server-signature RSA-PSS (4096 bits) client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id B930F85A46; Sat, 1 Jun 2019 07:40:24 +0000 (UTC) (envelope-from yuri@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 8F0BBCB66; Sat, 1 Jun 2019 07:40:24 +0000 (UTC) (envelope-from yuri@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id x517eOEs006949; Sat, 1 Jun 2019 07:40:24 GMT (envelope-from yuri@FreeBSD.org) Received: (from yuri@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id x517eNU3006944; Sat, 1 Jun 2019 07:40:23 GMT (envelope-from yuri@FreeBSD.org) Message-Id: <201906010740.x517eNU3006944@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: yuri set sender to yuri@FreeBSD.org using -f From: Yuri Victorovich Date: Sat, 1 Jun 2019 07:40:23 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r503225 - in head/graphics: . mirtk X-SVN-Group: ports-head X-SVN-Commit-Author: yuri X-SVN-Commit-Paths: in head/graphics: . mirtk X-SVN-Commit-Revision: 503225 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-Rspamd-Queue-Id: B930F85A46 X-Spamd-Bar: -- Authentication-Results: mx1.freebsd.org X-Spamd-Result: default: False [-2.85 / 15.00]; local_wl_from(0.00)[FreeBSD.org]; NEURAL_HAM_MEDIUM(-1.00)[-1.000,0]; NEURAL_HAM_LONG(-1.00)[-1.000,0]; NEURAL_HAM_SHORT(-0.85)[-0.852,0]; ASN(0.00)[asn:11403, ipnet:2610:1c1:1::/48, country:US] X-BeenThere: svn-ports-all@freebsd.org X-Mailman-Version: 2.1.29 Precedence: list List-Id: SVN commit messages for the ports tree List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sat, 01 Jun 2019 07:40:25 -0000 Author: yuri Date: Sat Jun 1 07:40:23 2019 New Revision: 503225 URL: https://svnweb.freebsd.org/changeset/ports/503225 Log: New port: graphics/mirtk: Medical Image Registration ToolKit (MIRTK) Added: head/graphics/mirtk/ head/graphics/mirtk/Makefile (contents, props changed) head/graphics/mirtk/distinfo (contents, props changed) head/graphics/mirtk/pkg-descr (contents, props changed) head/graphics/mirtk/pkg-plist (contents, props changed) Modified: head/graphics/Makefile Modified: head/graphics/Makefile ============================================================================== --- head/graphics/Makefile Sat Jun 1 07:39:39 2019 (r503224) +++ head/graphics/Makefile Sat Jun 1 07:40:23 2019 (r503225) @@ -551,6 +551,7 @@ SUBDIR += minder SUBDIR += ming SUBDIR += mirage + SUBDIR += mirtk SUBDIR += mmrecover SUBDIR += movit SUBDIR += mozjpeg Added: head/graphics/mirtk/Makefile ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/graphics/mirtk/Makefile Sat Jun 1 07:40:23 2019 (r503225) @@ -0,0 +1,28 @@ +# $FreeBSD$ + +PORTNAME= mirtk +DISTVERSIONPREFIX= v +DISTVERSION= 2.0.0-42 +DISTVERSIONSUFFIX= -g7390df6 +CATEGORIES= graphics + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Medical Image Registration ToolKit (MIRTK) + +LICENSE= APACHE20 +LICENSE_FILE= ${WRKSRC}/LICENSE.txt + +BUILD_DEPENDS= boost-libs>0:devel/boost-libs \ + nifticlib>0:science/nifticlib + +USES= cmake compiler:c++11-lang eigen:3 perl5 python +USE_GITHUB= yes +GH_ACCOUNT= BioMedIA +GH_PROJECT= ${PORTNAME:tu} +USE_LDCONFIG= yes + +post-stage: # https://github.com/BioMedIA/MIRTK/issues/674 + @${RM} ${STAGEDIR}${PREFIX}/bin/uninstall-mirtk + @${REINPLACE_CMD} -i '' 's|${STAGEDIR}||' ${STAGEDIR}${PREFIX}/lib/cmake/mirtk/MIRTKInstallManifest.txt + +.include Added: head/graphics/mirtk/distinfo ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/graphics/mirtk/distinfo Sat Jun 1 07:40:23 2019 (r503225) @@ -0,0 +1,3 @@ +TIMESTAMP = 1559372079 +SHA256 (BioMedIA-MIRTK-v2.0.0-42-g7390df6_GH0.tar.gz) = 9f6103cf15d58e062245d8e349b2fe4963e23a587bbbf5c91a93c9a2541c0439 +SIZE (BioMedIA-MIRTK-v2.0.0-42-g7390df6_GH0.tar.gz) = 2834975 Added: head/graphics/mirtk/pkg-descr ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/graphics/mirtk/pkg-descr Sat Jun 1 07:40:23 2019 (r503225) @@ -0,0 +1,8 @@ +The MIRTK is a research-focused image processing toolkit, developed at the +BioMedIA research group. It provides a collection of libraries and command-line +tools to assist in processing and analyzing imaging data. The main application +of the MIRTK is in adult and neonatal brain MR image registration as well as the +reconstruction of cortical surface meshes. The modular project organization of +the MIRTK enables the installation of selected modules. + +WWW: https://mirtk.github.io/ Added: head/graphics/mirtk/pkg-plist ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/graphics/mirtk/pkg-plist Sat Jun 1 07:40:23 2019 (r503225) @@ -0,0 +1,530 @@ +bin/mirtk +include/mirtk/AdaptiveLineSearch.h +include/mirtk/AffineTransformation.h +include/mirtk/Algorithm.h +include/mirtk/Allocate.h +include/mirtk/Arith.h +include/mirtk/Arpack.h +include/mirtk/Array.h +include/mirtk/ArrayHeap.h +include/mirtk/Assert.h +include/mirtk/BSpline.h +include/mirtk/BSplineFreeFormTransformation3D.h +include/mirtk/BSplineFreeFormTransformation4D.h +include/mirtk/BSplineFreeFormTransformationSV.h +include/mirtk/BSplineFreeFormTransformationStatistical.h +include/mirtk/BSplineFreeFormTransformationTD.h +include/mirtk/BSplineInterpolateImageFunction.h +include/mirtk/BSplineInterpolateImageFunction.hxx +include/mirtk/BSplineInterpolateImageFunction2D.h +include/mirtk/BSplineInterpolateImageFunction2D.hxx +include/mirtk/BSplineInterpolateImageFunction3D.h +include/mirtk/BSplineInterpolateImageFunction3D.hxx +include/mirtk/BSplineInterpolateImageFunction4D.h +include/mirtk/BSplineInterpolateImageFunction4D.hxx +include/mirtk/BaseImage.h +include/mirtk/BinaryVoxelFunction.h +include/mirtk/BrentLineSearch.h +include/mirtk/CSplineInterpolateImageFunction.h +include/mirtk/CSplineInterpolateImageFunction.hxx +include/mirtk/CSplineInterpolateImageFunction2D.h +include/mirtk/CSplineInterpolateImageFunction2D.hxx +include/mirtk/CSplineInterpolateImageFunction3D.h +include/mirtk/CSplineInterpolateImageFunction3D.hxx +include/mirtk/CSplineInterpolateImageFunction4D.h +include/mirtk/CSplineInterpolateImageFunction4D.hxx +include/mirtk/Cfstream.h +include/mirtk/CharbonnierErrorFunction.h +include/mirtk/Cifstream.h +include/mirtk/CityBlockDistanceTransform.h +include/mirtk/Closing.h +include/mirtk/Cofstream.h +include/mirtk/Common.h +include/mirtk/CommonConfig.h +include/mirtk/CommonExport.h +include/mirtk/Config.h +include/mirtk/Configurable.h +include/mirtk/ConjugateGradientDescent.h +include/mirtk/ConnectedComponents.h +include/mirtk/ConstExtrapolateImageFunction.h +include/mirtk/ConstExtrapolateImageFunctionWithPeriodicTime.h +include/mirtk/ConstGenericImageIterator.h +include/mirtk/ConstImageIterator.h +include/mirtk/ConstraintMeasure.h +include/mirtk/ConvolutionFunction.h +include/mirtk/CosineOfNormalizedGradientField.h +include/mirtk/CubicBSplineConvolution.h +include/mirtk/CubicBSplineInterpolateImageFunction.h +include/mirtk/CubicBSplineInterpolateImageFunction.hxx +include/mirtk/CubicBSplineInterpolateImageFunction2D.h +include/mirtk/CubicBSplineInterpolateImageFunction2D.hxx +include/mirtk/CubicBSplineInterpolateImageFunction3D.h +include/mirtk/CubicBSplineInterpolateImageFunction3D.hxx +include/mirtk/CubicBSplineInterpolateImageFunction4D.h +include/mirtk/CubicBSplineInterpolateImageFunction4D.hxx +include/mirtk/Cuda.h +include/mirtk/CudaRuntime.h +include/mirtk/CurrentsDistance.h +include/mirtk/CutilMath.h +include/mirtk/DataFidelity.h +include/mirtk/DataFunctions.h +include/mirtk/DataOp.h +include/mirtk/DataSelection.h +include/mirtk/DataStatistics.h +include/mirtk/Deallocate.h +include/mirtk/DifferenceOfCompositionLieBracketImageFilter3D.h +include/mirtk/Dilation.h +include/mirtk/DisplacementFieldExp.h +include/mirtk/DisplacementToVelocityField.h +include/mirtk/DisplacementToVelocityFieldBCH.h +include/mirtk/DistanceErrorFunction.h +include/mirtk/Downsampling.h +include/mirtk/Eigen.h +include/mirtk/EnergyMeasure.h +include/mirtk/EnergyTerm.h +include/mirtk/EnergyThreshold.h +include/mirtk/Erosion.h +include/mirtk/EuclideanDistanceTransform.h +include/mirtk/Event.h +include/mirtk/EventDelegate.h +include/mirtk/Exception.h +include/mirtk/ExtrapolateImageFunction.h +include/mirtk/ExtrapolationMode.h +include/mirtk/FFDIntegrationMethod.h +include/mirtk/FastCubicBSplineInterpolateImageFunction.h +include/mirtk/FastCubicBSplineInterpolateImageFunction.hxx +include/mirtk/FastCubicBSplineInterpolateImageFunction2D.h +include/mirtk/FastCubicBSplineInterpolateImageFunction2D.hxx +include/mirtk/FastCubicBSplineInterpolateImageFunction3D.h +include/mirtk/FastCubicBSplineInterpolateImageFunction3D.hxx +include/mirtk/FastCubicBSplineInterpolateImageFunction4D.h +include/mirtk/FastCubicBSplineInterpolateImageFunction4D.hxx +include/mirtk/FastDelegate.h +include/mirtk/FastLinearImageGradientFunction.h +include/mirtk/FastLinearImageGradientFunction.hxx +include/mirtk/FastLinearImageGradientFunction2D.h +include/mirtk/FastLinearImageGradientFunction2D.hxx +include/mirtk/FastLinearImageGradientFunction3D.h +include/mirtk/FastLinearImageGradientFunction3D.hxx +include/mirtk/FiducialRegistrationError.h +include/mirtk/FluidFreeFormTransformation.h +include/mirtk/ForEachBinaryVoxelFunction.h +include/mirtk/ForEachNonaryVoxelFunction.h +include/mirtk/ForEachOctaryVoxelFunction.h +include/mirtk/ForEachQuaternaryVoxelFunction.h +include/mirtk/ForEachQuinaryVoxelFunction.h +include/mirtk/ForEachSenaryVoxelFunction.h +include/mirtk/ForEachSeptenaryVoxelFunction.h +include/mirtk/ForEachTernaryVoxelFunction.h +include/mirtk/ForEachUnaryVoxelFunction.h +include/mirtk/FreeFormTransformation.h +include/mirtk/FreeFormTransformation3D.h +include/mirtk/FreeFormTransformation4D.h +include/mirtk/GIPLImageReader.h +include/mirtk/GIPLImageWriter.h +include/mirtk/GaussianBlurring.h +include/mirtk/GaussianBlurring2D.h +include/mirtk/GaussianBlurring4D.h +include/mirtk/GaussianBlurringWithPadding.h +include/mirtk/GaussianBlurringWithPadding2D.h +include/mirtk/GaussianErrorFunction.h +include/mirtk/GaussianInterpolateImageFunction.h +include/mirtk/GaussianInterpolateImageFunction.hxx +include/mirtk/GaussianInterpolateImageFunction2D.h +include/mirtk/GaussianInterpolateImageFunction2D.hxx +include/mirtk/GaussianInterpolateImageFunction3D.h +include/mirtk/GaussianInterpolateImageFunction3D.hxx +include/mirtk/GaussianInterpolateImageFunction4D.h +include/mirtk/GaussianInterpolateImageFunction4D.hxx +include/mirtk/GaussianPyramidFilter.h +include/mirtk/GenericImage.h +include/mirtk/GenericImageIterator.h +include/mirtk/GenericRegistrationDebugger.h +include/mirtk/GenericRegistrationFilter.h +include/mirtk/GenericRegistrationLogger.h +include/mirtk/GradientDescent.h +include/mirtk/GradientFieldSimilarity.h +include/mirtk/GradientImageFilter.h +include/mirtk/HashImage.h +include/mirtk/HashImage.hxx +include/mirtk/HessianImageFilter.h +include/mirtk/Histogram1D.h +include/mirtk/Histogram2D.h +include/mirtk/HistogramImageSimilarity.h +include/mirtk/HistogramMatching.h +include/mirtk/HomogeneousTransformation.h +include/mirtk/HomogeneousTransformationIterator.h +include/mirtk/IOConfig.h +include/mirtk/IOExport.h +include/mirtk/Image.h +include/mirtk/ImageAttributes.h +include/mirtk/ImageConfig.h +include/mirtk/ImageCovariance.h +include/mirtk/ImageExport.h +include/mirtk/ImageFunction.h +include/mirtk/ImageGradientFunction.h +include/mirtk/ImageGradientFunction.hxx +include/mirtk/ImageIterator.h +include/mirtk/ImageReader.h +include/mirtk/ImageReaderFactory.h +include/mirtk/ImageRegion.h +include/mirtk/ImageSequence.h +include/mirtk/ImageSequence.hh +include/mirtk/ImageSimilarity.h +include/mirtk/ImageToImage.h +include/mirtk/ImageToInterpolationCoefficients.h +include/mirtk/ImageTransformation.h +include/mirtk/ImageWriter.h +include/mirtk/ImageWriterFactory.h +include/mirtk/Indent.h +include/mirtk/InexactLineSearch.h +include/mirtk/IntensityCorrelationRatioXY.h +include/mirtk/IntensityCorrelationRatioYX.h +include/mirtk/IntensityCrossCorrelation.h +include/mirtk/InterpolateImageFunction.h 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