From owner-svn-ports-all@FreeBSD.ORG Sat May 3 03:17:25 2014 Return-Path: Delivered-To: svn-ports-all@freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [8.8.178.115]) (using TLSv1 with cipher ADH-AES256-SHA (256/256 bits)) (No client certificate requested) by hub.freebsd.org (Postfix) with ESMTPS id 629C4DB7; Sat, 3 May 2014 03:17:25 +0000 (UTC) Received: from svn.freebsd.org (svn.freebsd.org [IPv6:2001:1900:2254:2068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mx1.freebsd.org (Postfix) with ESMTPS id 4ACCC1953; Sat, 3 May 2014 03:17:25 +0000 (UTC) Received: from svn.freebsd.org ([127.0.1.70]) by svn.freebsd.org (8.14.8/8.14.8) with ESMTP id s433HPGj010609; Sat, 3 May 2014 03:17:25 GMT (envelope-from sunpoet@svn.freebsd.org) Received: (from sunpoet@localhost) by svn.freebsd.org (8.14.8/8.14.8/Submit) id s433HJ9F010576; Sat, 3 May 2014 03:17:19 GMT (envelope-from sunpoet@svn.freebsd.org) Message-Id: <201405030317.s433HJ9F010576@svn.freebsd.org> From: Sunpoet Po-Chuan Hsieh Date: Sat, 3 May 2014 03:17:19 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r352855 - in head: graphics/gdal graphics/gmt graphics/grads graphics/opendx math/grace math/gri math/labplot math/octave-forge-netcdf math/octave-forge-octcdf math/p5-NetCDF math/petsc... X-SVN-Group: ports-head MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-all@freebsd.org X-Mailman-Version: 2.1.17 Precedence: list List-Id: SVN commit messages for the ports tree List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sat, 03 May 2014 03:17:25 -0000 Author: sunpoet Date: Sat May 3 03:17:19 2014 New Revision: 352855 URL: http://svnweb.freebsd.org/changeset/ports/352855 QAT: https://qat.redports.org/buildarchive/r352855/ Log: - Update to 4.3.2 (from science/netcdf4) - Bump PORTREVISION for science/netcdf shlib change and dependency change from science/netcdf4 to science/netcdf [1] Changes: http://www.unidata.ucar.edu/software/netcdf/docs/release_notes.html Approved by: portmgr (bapt) [1] Modified: head/graphics/gdal/Makefile head/graphics/gmt/Makefile head/graphics/grads/Makefile head/graphics/opendx/Makefile head/math/grace/Makefile head/math/gri/Makefile head/math/labplot/Makefile head/math/octave-forge-netcdf/Makefile head/math/octave-forge-octcdf/Makefile head/math/p5-NetCDF/Makefile head/math/petsc/Makefile head/math/py-scientific/Makefile head/science/gnudatalanguage/Makefile head/science/kst2/Makefile head/science/minc/Makefile head/science/minc2/Makefile head/science/netcdf/Makefile head/science/netcdf/distinfo head/science/netcdf/pkg-descr head/science/netcdf/pkg-plist head/science/py-netCDF4/Makefile head/science/pycdf/Makefile head/science/ruby-netcdf/Makefile head/science/rubygem-netcdf/Makefile head/science/v_sim/Makefile head/science/vmd/Makefile Modified: head/graphics/gdal/Makefile ============================================================================== --- head/graphics/gdal/Makefile Sat May 3 00:55:30 2014 (r352854) +++ head/graphics/gdal/Makefile Sat May 3 03:17:19 2014 (r352855) @@ -3,7 +3,7 @@ PORTNAME= gdal PORTVERSION= 1.11.0 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= graphics geography MASTER_SITES= http://download.osgeo.org/gdal/${PORTVERSION}/ \ ftp://ftp.remotesensing.org/pub/gdal/${PORTVERSION}/ \ @@ -91,7 +91,7 @@ MYSQL_CONFIGURE_ON= --with-mysql=${LOCAL MYSQL_USE= MYSQL=yes NETCDF_CONFIGURE_OFF= --with-netcdf=no NETCDF_CONFIGURE_ON= --with-netcdf=${LOCALBASE} -NETCDF_LIB_DEPENDS= libnetcdf.so.7:${PORTSDIR}/science/netcdf4 +NETCDF_LIB_DEPENDS= libnetcdf.so:${PORTSDIR}/science/netcdf ODBC_CONFIGURE_OFF= --with-odbc=no ODBC_CONFIGURE_ON= --with-odbc=${LOCALBASE} ODBC_LIB_DEPENDS= libodbc.so:${PORTSDIR}/databases/unixODBC Modified: head/graphics/gmt/Makefile ============================================================================== --- head/graphics/gmt/Makefile Sat May 3 00:55:30 2014 (r352854) +++ head/graphics/gmt/Makefile Sat May 3 03:17:19 2014 (r352855) @@ -3,7 +3,7 @@ PORTNAME= gmt PORTVERSION= 4.5.12 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= graphics MASTER_SITES= ftp://ftp.soest.hawaii.edu/%SUBDIR%/ \ ftp://ftp.geologi.uio.no/pub/%SUBDIR%/ \ @@ -25,7 +25,7 @@ LICENSE_COMB= multi LICENSE_DISTFILES_GPLv2= ${DISTNAME}${EXTRACT_SUFX} LICENSE_DISTFILES_LGPL3= ${GSHHG_DISTNAME}${EXTRACT_SUFX} -LIB_DEPENDS= libnetcdf.so:${PORTSDIR}/science/netcdf4 +LIB_DEPENDS= libnetcdf.so:${PORTSDIR}/science/netcdf RUN_DEPENDS= bash:${PORTSDIR}/shells/bash WRKSRC= ${WRKDIR}/${PORTNAME}-${PORTVERSION} Modified: head/graphics/grads/Makefile ============================================================================== --- head/graphics/grads/Makefile Sat May 3 00:55:30 2014 (r352854) +++ head/graphics/grads/Makefile Sat May 3 03:17:19 2014 (r352855) @@ -3,7 +3,7 @@ PORTNAME= grads PORTVERSION= 1.9b4 -PORTREVISION= 8 +PORTREVISION= 9 CATEGORIES= graphics science math MASTER_SITES= ftp://grads.iges.org/grads/1.9/:src \ ftp://grads.iges.org/grads/:other @@ -55,7 +55,7 @@ PLIST_SUB+= NETCDF="@comment " HDF="" .endif .if ${PORT_OPTIONS:MNETCDF} -LIB_DEPENDS+= netcdf:${PORTSDIR}/science/netcdf4 +LIB_DEPENDS+= libnetcdf.so:${PORTSDIR}/science/netcdf CONFIGURE_ARGS+= --with-nc PLIST_SUB+= NETCDF="" HDF="@comment " .endif Modified: head/graphics/opendx/Makefile ============================================================================== --- head/graphics/opendx/Makefile Sat May 3 00:55:30 2014 (r352854) +++ head/graphics/opendx/Makefile Sat May 3 03:17:19 2014 (r352855) @@ -3,7 +3,7 @@ PORTNAME= opendx PORTVERSION= 4.4.4 -PORTREVISION= 15 +PORTREVISION= 16 CATEGORIES= graphics math java MASTER_SITES= http://www.sfr-fresh.com/unix/misc/ DISTNAME= dx-${PORTVERSION} @@ -40,7 +40,7 @@ CONFIGURE_ARGS+= --without-hdf .endif .if !defined(WITHOUT_NETCDF) -LIB_DEPENDS+= netcdf:${PORTSDIR}/science/netcdf4 +LIB_DEPENDS+= libnetcdf.so:${PORTSDIR}/science/netcdf .else CONFIGURE_ARGS+= --without-netcdf .endif Modified: head/math/grace/Makefile ============================================================================== --- head/math/grace/Makefile Sat May 3 00:55:30 2014 (r352854) +++ head/math/grace/Makefile Sat May 3 03:17:19 2014 (r352855) @@ -3,7 +3,7 @@ PORTNAME= grace PORTVERSION= 5.1.23 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= math print MASTER_SITES= ftp://ftp.fu-berlin.de/unix/graphics/grace/src/stable/ \ ftp://ftp.ntua.gr/pub/graphics/grace/src/stable/ \ @@ -51,7 +51,7 @@ CONFIGURE_ARGS+= --without-fftw .endif .if ${PORT_OPTIONS:MNETCDF} -LIB_DEPENDS+= netcdf:${PORTSDIR}/science/netcdf +LIB_DEPENDS+= libnetcdf.so:${PORTSDIR}/science/netcdf CONFIGURE_ARGS+= --enable-netcdf .else CONFIGURE_ARGS+= --disable-netcdf Modified: head/math/gri/Makefile ============================================================================== --- head/math/gri/Makefile Sat May 3 00:55:30 2014 (r352854) +++ head/math/gri/Makefile Sat May 3 03:17:19 2014 (r352855) @@ -3,13 +3,14 @@ PORTNAME= gri PORTVERSION= 2.12.23 +PORTREVISION= 1 CATEGORIES= math MASTER_SITES= SF MAINTAINER= ports@FreeBSD.org COMMENT= Extensible plotting language for producing scientific graphs -LIB_DEPENDS= netcdf:${PORTSDIR}/science/netcdf +LIB_DEPENDS= libnetcdf.so:${PORTSDIR}/science/netcdf USES= readline USE_GMAKE= yes Modified: head/math/labplot/Makefile ============================================================================== --- head/math/labplot/Makefile Sat May 3 00:55:30 2014 (r352854) +++ head/math/labplot/Makefile Sat May 3 03:17:19 2014 (r352855) @@ -3,7 +3,7 @@ PORTNAME= labplot DISTVERSION= 2.0.0.beta2 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= math kde MASTER_SITES= SF/${PORTNAME}/${PORTNAME}/${PORTVERSION:R} Modified: head/math/octave-forge-netcdf/Makefile ============================================================================== --- head/math/octave-forge-netcdf/Makefile Sat May 3 00:55:30 2014 (r352854) +++ head/math/octave-forge-netcdf/Makefile Sat May 3 03:17:19 2014 (r352855) @@ -3,7 +3,7 @@ PORTNAME= octave-forge-netcdf PORTVERSION= 1.0.2 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= math MAINTAINER= stephen@FreeBSD.org @@ -17,7 +17,7 @@ OCTSRC= ${OCTAVE_PKGNAME} WRKSRC= ${WRKDIR}/${OCTSRC}/src -LIB_DEPENDS+= netcdf:${PORTSDIR}/science/netcdf4 +LIB_DEPENDS+= libnetcdf.so:${PORTSDIR}/science/netcdf .include "${.CURDIR}/../../Mk/bsd.octave.mk" Modified: head/math/octave-forge-octcdf/Makefile ============================================================================== --- head/math/octave-forge-octcdf/Makefile Sat May 3 00:55:30 2014 (r352854) +++ head/math/octave-forge-octcdf/Makefile Sat May 3 03:17:19 2014 (r352855) @@ -3,7 +3,7 @@ PORTNAME= octave-forge-octcdf PORTVERSION= 1.1.7 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= math MAINTAINER= stephen@FreeBSD.org @@ -17,7 +17,7 @@ OCTSRC= ${OCTAVE_PKGNAME} WRKSRC= ${WRKDIR}/${OCTSRC}/src -LIB_DEPENDS+= netcdf:${PORTSDIR}/science/netcdf4 +LIB_DEPENDS+= libnetcdf.so:${PORTSDIR}/science/netcdf .include "${.CURDIR}/../../Mk/bsd.octave.mk" Modified: head/math/p5-NetCDF/Makefile ============================================================================== --- head/math/p5-NetCDF/Makefile Sat May 3 00:55:30 2014 (r352854) +++ head/math/p5-NetCDF/Makefile Sat May 3 03:17:19 2014 (r352855) @@ -3,7 +3,7 @@ PORTNAME= NetCDF PORTVERSION= 1.2.4 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= math perl5 MASTER_SITES= ftp://ftp.unidata.ucar.edu/pub/netcdf-perl/ PKGNAMEPREFIX= p5- @@ -12,13 +12,7 @@ DISTNAME= netcdf-perl-${PORTVERSION} MAINTAINER= rand@meridian-enviro.com COMMENT= Perl5 module to read and write netCDF files -NETCDF_VER?= 4 - -.if (${NETCDF_VER} == 4) -LIB_DEPENDS= libnetcdf.so.7:${PORTSDIR}/science/netcdf4 -.else -LIB_DEPENDS= libnetcdf.so.4:${PORTSDIR}/science/netcdf -.endif +LIB_DEPENDS= libnetcdf.so:${PORTSDIR}/science/netcdf USES= perl5 Modified: head/math/petsc/Makefile ============================================================================== --- head/math/petsc/Makefile Sat May 3 00:55:30 2014 (r352854) +++ head/math/petsc/Makefile Sat May 3 03:17:19 2014 (r352855) @@ -3,7 +3,7 @@ PORTNAME= petsc DISTVERSION= 2.3.3-p0 -PORTREVISION= 9 +PORTREVISION= 10 PORTEPOCH= 1 CATEGORIES= math parallel MASTER_SITES= ftp://ftp.mcs.anl.gov/pub/petsc/release-snapshots/ @@ -187,7 +187,7 @@ CONFIGURE_ARGS+= --with-scalapack=1 \ WITH_NETCDF= yes .endif .if defined(WITH_NETCDF) -LIB_DEPENDS+= netcdf.4:${PORTSDIR}/science/netcdf +LIB_DEPENDS+= libnetcdf.so:${PORTSDIR}/science/netcdf CONFIGURE_ENV+= PNETCDF_INCLUDE=${LOCALBASE}/include \ PNETCDF_LIB=${LOCALBASE}/lib .endif Modified: head/math/py-scientific/Makefile ============================================================================== --- head/math/py-scientific/Makefile Sat May 3 00:55:30 2014 (r352854) +++ head/math/py-scientific/Makefile Sat May 3 03:17:19 2014 (r352855) @@ -3,7 +3,7 @@ PORTNAME= scientific PORTVERSION= 2.8 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= math python MASTER_SITES= http://sourcesup.cru.fr/frs/download.php/2309/ PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -13,7 +13,7 @@ MAINTAINER= fmysh@iijmio-mail.jp COMMENT= Collection of Python modules for scientific computing BUILD_DEPENDS= ${PYNUMPY} -LIB_DEPENDS= netcdf.4:${PORTSDIR}/science/netcdf +LIB_DEPENDS= libnetcdf.so:${PORTSDIR}/science/netcdf RUN_DEPENDS= ${PYNUMPY} USE_PYTHON= yes Modified: head/science/gnudatalanguage/Makefile ============================================================================== --- head/science/gnudatalanguage/Makefile Sat May 3 00:55:30 2014 (r352854) +++ head/science/gnudatalanguage/Makefile Sat May 3 03:17:19 2014 (r352855) @@ -3,7 +3,7 @@ PORTNAME= gnudatalanguage DISTVERSION= 0.9.4 -PORTREVISION= 4 +PORTREVISION= 5 CATEGORIES= science lang MASTER_SITES= SF/${PORTNAME}/gdl/${DISTVERSION} .if defined(BUILD_PYTHON_MODULE) Modified: head/science/kst2/Makefile ============================================================================== --- head/science/kst2/Makefile Sat May 3 00:55:30 2014 (r352854) +++ head/science/kst2/Makefile Sat May 3 03:17:19 2014 (r352855) @@ -3,7 +3,7 @@ PORTNAME= kst DISTVERSION= 2.0.6 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= science kde MASTER_SITES= SF/${PORTNAME}/Kst%20${DISTVERSION:C/-r.*//}/ Modified: head/science/minc/Makefile ============================================================================== --- head/science/minc/Makefile Sat May 3 00:55:30 2014 (r352854) +++ head/science/minc/Makefile Sat May 3 03:17:19 2014 (r352855) @@ -12,13 +12,14 @@ PORTNAME= minc PORTVERSION= 1.5.1 +PORTREVISION= 1 CATEGORIES= science biology MASTER_SITES= http://www.nitrc.org/frs/downloadlink.php/400/ MAINTAINER= jwbacon@tds.net COMMENT= Medical Imaging NetCDF -LIB_DEPENDS= netcdf.4:${PORTSDIR}/science/netcdf +LIB_DEPENDS= libnetcdf.so:${PORTSDIR}/science/netcdf USE_AUTOTOOLS= libtool USE_LDCONFIG= yes Modified: head/science/minc2/Makefile ============================================================================== --- head/science/minc2/Makefile Sat May 3 00:55:30 2014 (r352854) +++ head/science/minc2/Makefile Sat May 3 03:17:19 2014 (r352855) @@ -12,7 +12,7 @@ PORTNAME= minc PORTVERSION= 2.0.18 -PORTREVISION= 1 +PORTREVISION= 2 PORTEPOCH= 1 CATEGORIES= science biology MASTER_SITES= http://packages.bic.mni.mcgill.ca/tgz/ \ @@ -24,7 +24,7 @@ COMMENT= Medical Imaging NetCDF LICENSE= BSD -LIB_DEPENDS= libnetcdf.so.4:${PORTSDIR}/science/netcdf \ +LIB_DEPENDS= libnetcdf.so:${PORTSDIR}/science/netcdf \ libhdf5.so:${PORTSDIR}/science/hdf5 USE_AUTOTOOLS= libtool Modified: head/science/netcdf/Makefile ============================================================================== --- head/science/netcdf/Makefile Sat May 3 00:55:30 2014 (r352854) +++ head/science/netcdf/Makefile Sat May 3 03:17:19 2014 (r352855) @@ -1,65 +1,65 @@ -# Created by: Thomas Gellekum +# Created by: Sunpoet Po-Chuan Hsieh # $FreeBSD$ PORTNAME= netcdf -PORTVERSION= 3.6.3 -PORTREVISION?= 7 +PORTVERSION= 4.3.2 CATEGORIES= science MASTER_SITES= http://www.unidata.ucar.edu/downloads/netcdf/ftp/ \ ftp://ftp.unidata.ucar.edu/pub/netcdf/ \ LOCAL/sunpoet -PKGNAMESUFFIX?= 3 MAINTAINER= sunpoet@FreeBSD.org -COMMENT?= Library for machine-independent, array-oriented data access +COMMENT= C library for machine-independent, array-oriented data access -CONFLICTS= hdf-4.* netcdf-4.* -PORTSCOUT= limit:^3\. +LIB_DEPENDS= libhdf5.so:${PORTSDIR}/science/hdf5 -CONFIGURE_ARGS= --enable-shared -CPPFLAGS+= -I${LOCALBASE}/include -fPIC -DPIC -GNU_CONFIGURE= yes -USES= gmake libtool:keepla +CONFLICTS_INSTALL= hdf-4.[0-9]* netcdf-3.[0-9]* netcdf3-3.[0-9]* +PORTSCOUT= limit:^4\. + +OPTIONS_DEFINE= DAP DOCS DOXYGEN SZIP +OPTIONS_DEFAULT=DAP SZIP +DAP_DESC= Build DAP client and remote testing +SZIP_DESC= SZIP support (required if HDF5 was built with SZIP) + +CFLAGS+= -I${WRKSRC}/include -I${LOCALBASE}/include -fPIC -DPIC +CMAKE_ARGS= -DHDF5_INCLUDE_DIRS=${LOCALBASE} -DUSE_HDF5=ON -DZLIB_INCLUDE_DIRS=/usr +LDFLAGS+= -L${LOCALBASE}/lib USE_LDCONFIG= yes +USES= cmake pathfix -INFO= netcdf netcdf-c netcdf-cxx netcdf-f77 netcdf-f90 \ - netcdf-install netcdf-tutorial +PLIST_SUB= PORTVERSION=${PORTVERSION} +PORTDOCS= * -OPTIONS_DEFINE= FORTRAN DOCS -FORTRAN_DESC= Build library for Fortran +DAP_CMAKE_OFF= -DENABLE_DAP=OFF -DENABLE_DAP_REMOTE_TESTS=OFF +DAP_CMAKE_ON= -DCURL_INCLUDE_DIRS=${LOCALBASE} -DENABLE_DAP=ON +DAP_LIB_DEPENDS= libcurl.so:${PORTSDIR}/ftp/curl +DOXYGEN_BUILD_DEPENDS= ${LOCALBASE}/bin/doxygen:${PORTSDIR}/devel/doxygen +DOXYGEN_CMAKE_OFF= -DENABLE_DOXYGEN=OFF +DOXYGEN_CMAKE_ON= -DENABLE_DOXYGEN=ON +SZIP_CMAKE_OFF= -DUSE_SZIP=OFF +SZIP_CMAKE_ON= -DSZIP_DIR=${LOCALBASE} -DSZIP_INCLUDE_DIRS=${LOCALBASE} -DUSE_SZIP=ON +SZIP_LDFLAGS= -lsz +SZIP_LIB_DEPENDS= libsz.so:${PORTSDIR}/science/szip .include -.if ${PORT_OPTIONS:MDOCS} -CONFIGURE_ARGS+=--enable-docs-install -.else -CONFIGURE_ARGS+=--disable-docs-install -.endif - -.if ${PORT_OPTIONS:MFORTRAN} -CPPFLAGS+= -DpgiFortran -CONFLICTS+= netcdf-3.* -PLIST_SUB+= FORTRAN="" -USES+= fortran -.else -CONFIGURE_ARGS+=--disable-f77 --disable-f90 -CONFLICTS+= netcdf-ftn-3.* -PLIST_SUB+= FORTRAN="@comment " +post-patch: + @${REINPLACE_CMD} -e '/man4/d; s|share/cmake|&/Modules|; s|$${CMAKE_INSTALL_LIBDIR}/pkgconfig|libdata/pkgconfig|' ${WRKSRC}/CMakeLists.txt + @${REINPLACE_CMD} -e 's|share/man|man|' ${WRKSRC}/libsrc/CMakeLists.txt ${WRKSRC}/ncdump/CMakeLists.txt ${WRKSRC}/ncgen/CMakeLists.txt ${WRKSRC}/ncgen3/CMakeLists.txt + @${REINPLACE_CMD} -e 's|mmap|_&|g' ${WRKSRC}/nc_test/tst_diskless.c ${WRKSRC}/nc_test/tst_diskless3.c + +post-build: +.if ${PORT_OPTIONS:MDOCS} && ${PORT_OPTIONS:MDOXYGEN} + @cd ${WRKSRC}/man4 && ${LOCALBASE}/bin/doxygen . .endif -post-patch: - @${REINPLACE_CMD} -e \ - '291 s/\(html_docs)\).*/\1/' \ - ${WRKSRC}/man/Makefile.in - @${REINPLACE_CMD} -e \ - '271 s/\(info_docs\).*/html_docs\)/' \ - ${WRKSRC}/man4/Makefile.in -.if ! ${PORT_OPTIONS:MDOCS} - @${REINPLACE_CMD} -e '790 s/install-docDATA //' \ - ${WRKSRC}/man/Makefile.in +post-install: +.if ${PORT_OPTIONS:MDOCS} && ${PORT_OPTIONS:MDOXYGEN} + ${MKDIR} ${STAGEDIR}${DOCSDIR}/ + cd ${WRKSRC}/man4/html/ && ${COPYTREE_SHARE} . ${STAGEDIR}${DOCSDIR} .endif -regression-test: build - @cd ${WRKSRC} && ${SETENV} ${MAKE_ENV} ${MAKE} check +regression-test test: build + cd ${WRKSRC}/ && ${SETENV} ${MAKE_ENV} ${MAKE_CMD} check .include Modified: head/science/netcdf/distinfo ============================================================================== --- head/science/netcdf/distinfo Sat May 3 00:55:30 2014 (r352854) +++ head/science/netcdf/distinfo Sat May 3 03:17:19 2014 (r352855) @@ -1,2 +1,2 @@ -SHA256 (netcdf-3.6.3.tar.gz) = afa1a0fa82b9ea33b035257b6e9662b22e135f98b2fd93d5cf030320dfc3ffa1 -SIZE (netcdf-3.6.3.tar.gz) = 11572512 +SHA256 (netcdf-4.3.2.tar.gz) = 57086b4383ce9232f05aad70761c2a6034b1a0c040260577d369b3bbfe6d248e +SIZE (netcdf-4.3.2.tar.gz) = 5013938 Modified: head/science/netcdf/pkg-descr ============================================================================== --- head/science/netcdf/pkg-descr Sat May 3 00:55:30 2014 (r352854) +++ head/science/netcdf/pkg-descr Sat May 3 03:17:19 2014 (r352855) @@ -6,4 +6,6 @@ library, and format support the creation scientific data. The netCDF software was developed at the Unidata Program Center in Boulder, Colorado. +Git repository: https://github.com/Unidata/netcdf-c + WWW: http://www.unidata.ucar.edu/software/netcdf/ Modified: head/science/netcdf/pkg-plist ============================================================================== --- head/science/netcdf/pkg-plist Sat May 3 00:55:30 2014 (r352854) +++ head/science/netcdf/pkg-plist Sat May 3 03:17:19 2014 (r352855) @@ -1,63 +1,21 @@ +bin/nc-config +bin/nccopy bin/ncdump bin/ncgen -include/ncvalues.h +bin/ncgen3 include/netcdf.h -include/netcdf.hh -%%FORTRAN%%include/netcdf.inc -%%FORTRAN%%include/netcdf.mod -include/netcdfcpp.h -%%FORTRAN%%include/typesizes.mod -lib/libnetcdf.a -lib/libnetcdf.la lib/libnetcdf.so -lib/libnetcdf.so.4 -lib/libnetcdf.so.4.0.0 -lib/libnetcdf_c++.a -lib/libnetcdf_c++.la -lib/libnetcdf_c++.so -lib/libnetcdf_c++.so.4 -lib/libnetcdf_c++.so.4.0.0 -%%FORTRAN%%lib/libnetcdff.a -%%FORTRAN%%lib/libnetcdff.la -%%FORTRAN%%lib/libnetcdff.so -%%FORTRAN%%lib/libnetcdff.so.4 -%%FORTRAN%%lib/libnetcdff.so.4.0.0 +lib/libnetcdf.so.%%PORTVERSION%% +lib/libnetcdf.so.7.2.0 +libdata/pkgconfig/netcdf.pc +man/man1/nccopy.1.gz man/man1/ncdump.1.gz man/man1/ncgen.1.gz +man/man1/ncgen3.1.gz man/man3/netcdf.3.gz -%%FORTRAN%%man/man3/netcdf_f77.3.gz -%%FORTRAN%%man/man3/netcdf_f90.3.gz -%%PORTDOCS%%%%DOCSDIR%%/ncgen-man-1.html -%%PORTDOCS%%%%DOCSDIR%%/ncdump-man-1.html -%%PORTDOCS%%%%DOCSDIR%%/netcdf-c.html -%%PORTDOCS%%%%DOCSDIR%%/netcdf-c.pdf -%%PORTDOCS%%%%DOCSDIR%%/netcdf-c.ps -%%PORTDOCS%%%%DOCSDIR%%/netcdf-c.txt -%%PORTDOCS%%%%DOCSDIR%%/netcdf-cxx.html -%%PORTDOCS%%%%DOCSDIR%%/netcdf-cxx.pdf -%%PORTDOCS%%%%DOCSDIR%%/netcdf-cxx.ps -%%PORTDOCS%%%%DOCSDIR%%/netcdf-cxx.txt -%%PORTDOCS%%%%DOCSDIR%%/netcdf-f77.html -%%PORTDOCS%%%%DOCSDIR%%/netcdf-f77.pdf -%%PORTDOCS%%%%DOCSDIR%%/netcdf-f77.ps -%%PORTDOCS%%%%DOCSDIR%%/netcdf-f77.txt -%%PORTDOCS%%%%DOCSDIR%%/netcdf-f90.html -%%PORTDOCS%%%%DOCSDIR%%/netcdf-f90.pdf -%%PORTDOCS%%%%DOCSDIR%%/netcdf-f90.ps -%%PORTDOCS%%%%DOCSDIR%%/netcdf-f90.txt -%%PORTDOCS%%%%DOCSDIR%%/netcdf-install.html -%%PORTDOCS%%%%DOCSDIR%%/netcdf-install.pdf -%%PORTDOCS%%%%DOCSDIR%%/netcdf-install.ps -%%PORTDOCS%%%%DOCSDIR%%/netcdf-install.txt -%%PORTDOCS%%%%DOCSDIR%%/netcdf-man-3.html -%%PORTDOCS%%%%DOCSDIR%%/netcdf-tutorial.html -%%PORTDOCS%%%%DOCSDIR%%/netcdf-tutorial.pdf -%%PORTDOCS%%%%DOCSDIR%%/netcdf-tutorial.ps -%%PORTDOCS%%%%DOCSDIR%%/netcdf-tutorial.txt -%%PORTDOCS%%%%DOCSDIR%%/netcdf_f77-man.html -%%PORTDOCS%%%%DOCSDIR%%/netcdf_f90-man.html -%%PORTDOCS%%%%DOCSDIR%%/netcdf.html -%%PORTDOCS%%%%DOCSDIR%%/netcdf.pdf -%%PORTDOCS%%%%DOCSDIR%%/netcdf.ps -%%PORTDOCS%%%%DOCSDIR%%/netcdf.txt -%%PORTDOCS%%@dirrm %%DOCSDIR%% +share/cmake/Modules/netcdf-config-version.cmake +share/cmake/Modules/netcdf-config.cmake +share/cmake/Modules/netcdf-targets-%%CMAKE_BUILD_TYPE%%.cmake +share/cmake/Modules/netcdf-targets.cmake +@dirrmtry share/cmake/Modules +@dirrmtry share/cmake Modified: head/science/py-netCDF4/Makefile ============================================================================== --- head/science/py-netCDF4/Makefile Sat May 3 00:55:30 2014 (r352854) +++ head/science/py-netCDF4/Makefile Sat May 3 03:17:19 2014 (r352855) @@ -3,7 +3,7 @@ PORTNAME= netCDF4 PORTVERSION= 1.0.5 -PORTREVISION= 3 +PORTREVISION= 4 CATEGORIES= science python MASTER_SITES= GOOGLE_CODE PROJECTHOST= netcdf4-python @@ -16,7 +16,7 @@ LICENSE= MIT BUILD_DEPENDS= ${PYNUMPY} LIB_DEPENDS= libhdf5.so:${PORTSDIR}/science/hdf5 \ - libnetcdf.so:${PORTSDIR}/science/netcdf4 + libnetcdf.so:${PORTSDIR}/science/netcdf RUN_DEPENDS= ${PYNUMPY} OPTIONS_DEFINE= DOCS EXAMPLES Modified: head/science/pycdf/Makefile ============================================================================== --- head/science/pycdf/Makefile Sat May 3 00:55:30 2014 (r352854) +++ head/science/pycdf/Makefile Sat May 3 03:17:19 2014 (r352855) @@ -3,7 +3,7 @@ PORTNAME= pycdf PORTVERSION= 0.6.3 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= science python MASTER_SITES= SF/pysclint/${PORTNAME}/${PORTNAME}-${PORTVERSION}b DISTNAME= ${PORTNAME}-0.6-3b @@ -11,8 +11,8 @@ DISTNAME= ${PORTNAME}-0.6-3b MAINTAINER= wenheping@gmail.com COMMENT= A Python Interface to the Unidata NetCDF Library -BUILD_DEPENDS= ${PYTHON_SITELIBDIR}/numpy:${PORTSDIR}/math/py-numpy \ - ${LOCALBASE}/lib/libnetcdf.so:${PORTSDIR}/science/netcdf +BUILD_DEPENDS= ${PYTHON_SITELIBDIR}/numpy:${PORTSDIR}/math/py-numpy +LIB_DEPENDS= libnetcdf.so:${PORTSDIR}/science/netcdf RUN_DEPENDS:= ${BUILD_DEPENDS} LDFLAGS+= "-L${LOCALBASE}/lib" Modified: head/science/ruby-netcdf/Makefile ============================================================================== --- head/science/ruby-netcdf/Makefile Sat May 3 00:55:30 2014 (r352854) +++ head/science/ruby-netcdf/Makefile Sat May 3 03:17:19 2014 (r352855) @@ -3,7 +3,7 @@ PORTNAME= netcdf PORTVERSION= 0.6.6 -PORTREVISION= 2 +PORTREVISION= 3 CATEGORIES= science ruby MASTER_SITES= http://ruby.gfd-dennou.org/products/ruby-netcdf/release/ \ http://dennou-h.gfd-dennou.org/library/ruby/products/ruby-netcdf/release/ \ Modified: head/science/rubygem-netcdf/Makefile ============================================================================== --- head/science/rubygem-netcdf/Makefile Sat May 3 00:55:30 2014 (r352854) +++ head/science/rubygem-netcdf/Makefile Sat May 3 03:17:19 2014 (r352855) @@ -3,6 +3,7 @@ PORTNAME= netcdf PORTVERSION= 0.6.6.1 +PORTREVISION= 1 CATEGORIES= science rubygems MASTER_SITES= RG DISTNAME= ruby-${PORTNAME}-${PORTVERSION} Modified: head/science/v_sim/Makefile ============================================================================== --- head/science/v_sim/Makefile Sat May 3 00:55:30 2014 (r352854) +++ head/science/v_sim/Makefile Sat May 3 03:17:19 2014 (r352855) @@ -3,6 +3,7 @@ PORTNAME= v_sim PORTVERSION= 3.7.1 +PORTREVISION= 1 CATEGORIES= science MASTER_SITES= http://www-drfmc.cea.fr/sp2m/L_Sim/V_Sim/download/ Modified: head/science/vmd/Makefile ============================================================================== --- head/science/vmd/Makefile Sat May 3 00:55:30 2014 (r352854) +++ head/science/vmd/Makefile Sat May 3 03:17:19 2014 (r352855) @@ -3,6 +3,7 @@ PORTNAME= vmd DISTVERSION= 1.9.1 +PORTREVISION= 1 CATEGORIES= science graphics python tcl tk MASTER_SITES= http://jedi.ks.uiuc.edu/~johns/raytracer/files/0.99b2/:tachyon \ http://www.photonlimited.com/~johns/tachyon/files/0.99b2/:tachyon \ @@ -16,10 +17,10 @@ COMMENT= A molecular visualization prog BUILD_DEPENDS= makedepend:${PORTSDIR}/devel/makedepend \ ${PYNUMERIC} -LIB_DEPENDS= tcl85:${PORTSDIR}/lang/tcl85 \ - tk85:${PORTSDIR}/x11-toolkits/tk85 \ - fltk.1:${PORTSDIR}/x11-toolkits/fltk \ - netcdf:${PORTSDIR}/science/netcdf +LIB_DEPENDS= libtcl85.so:${PORTSDIR}/lang/tcl85 \ + libtk85.so:${PORTSDIR}/x11-toolkits/tk85 \ + libfltk.so:${PORTSDIR}/x11-toolkits/fltk \ + libnetcdf.so:${PORTSDIR}/science/netcdf RUN_DEPENDS= ${PYNUMERIC} USES= gmake perl5