From owner-dev-commits-ports-all@freebsd.org Fri Jun 18 21:28:50 2021 Return-Path: Delivered-To: dev-commits-ports-all@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id 59D0964CFEB; Fri, 18 Jun 2021 21:28:50 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4G6Br21t3hz3LRg; Fri, 18 Jun 2021 21:28:50 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 242511D7A; Fri, 18 Jun 2021 21:28:50 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 15ILSo1t042483; Fri, 18 Jun 2021 21:28:50 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 15ILSoBs042482; Fri, 18 Jun 2021 21:28:50 GMT (envelope-from git) Date: Fri, 18 Jun 2021 21:28:50 GMT Message-Id: <202106182128.15ILSoBs042482@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: 98807e08be7e - main - science/csvtk: Cross-platform and ultrafast toolkit for CSV/TSV processing MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 98807e08be7e890aaaea5710823a192ca318658b Auto-Submitted: auto-generated X-BeenThere: dev-commits-ports-all@freebsd.org X-Mailman-Version: 2.1.34 Precedence: list List-Id: Commit messages for all branches of the ports repository List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Fri, 18 Jun 2021 21:28:50 -0000 The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=98807e08be7e890aaaea5710823a192ca318658b commit 98807e08be7e890aaaea5710823a192ca318658b Author: Jason W. Bacon AuthorDate: 2021-06-18 21:28:21 +0000 Commit: Jason W. Bacon CommitDate: 2021-06-18 21:28:21 +0000 science/csvtk: Cross-platform and ultrafast toolkit for CSV/TSV processing CSV/TSV formats are basic and ubiquitous file formats in both Bioinformatics and data science. People usually use spreadsheet software like MS Excel to process table data. However this is all by clicking and typing, which is not automated and is time-consuming to repeat, especially when you want to apply similar operations with different datasets or purposes. csvtk is convenient for rapid data investigation and also easy to integrate into analysis pipelines. It could save you lots of time in (not) writing Python/R scripts. --- science/Makefile | 1 + science/csvtk/Makefile | 19 +++++++++++++++++++ science/csvtk/distinfo | 5 +++++ science/csvtk/pkg-descr | 13 +++++++++++++ 4 files changed, 38 insertions(+) diff --git a/science/Makefile b/science/Makefile index 9e8caadfabb7..17618e77c829 100644 --- a/science/Makefile +++ b/science/Makefile @@ -55,6 +55,7 @@ SUBDIR += cp2k SUBDIR += cp2k-data SUBDIR += crf++ + SUBDIR += csvtk SUBDIR += dakota SUBDIR += dalton SUBDIR += dcl diff --git a/science/csvtk/Makefile b/science/csvtk/Makefile new file mode 100644 index 000000000000..6a7a41f3f99c --- /dev/null +++ b/science/csvtk/Makefile @@ -0,0 +1,19 @@ +PORTNAME= csvtk +DISTVERSIONPREFIX= v +DISTVERSION= 0.23.0 +CATEGORIES= science + +MAINTAINER= jwb@FreeBSD.org +COMMENT= Cross-platform and ultrafast toolkit for CSV/TSV processing + +LICENSE= MIT +LICENSE_FILE= ${WRKSRC}/LICENSE + +USES= go:modules + +GO_MODULE= github.com/shenwei356/csvtk +GO_TARGET= ./${PORTNAME} + +PLIST_FILES= bin/${PORTNAME} + +.include diff --git a/science/csvtk/distinfo b/science/csvtk/distinfo new file mode 100644 index 000000000000..0ff07fd83b5b --- /dev/null +++ b/science/csvtk/distinfo @@ -0,0 +1,5 @@ +TIMESTAMP = 1624051618 +SHA256 (go/science_csvtk/csvtk-v0.23.0/v0.23.0.mod) = 7c31a467710c872fa06c3cfce632c6f193b30caefe1d2503115485f9c8e626d2 +SIZE (go/science_csvtk/csvtk-v0.23.0/v0.23.0.mod) = 956 +SHA256 (go/science_csvtk/csvtk-v0.23.0/v0.23.0.zip) = bbaba0de0d95c1f8144dea5927abbfff6e6bdfba87d8c11d2cfefdde4cf9da76 +SIZE (go/science_csvtk/csvtk-v0.23.0/v0.23.0.zip) = 1718316 diff --git a/science/csvtk/pkg-descr b/science/csvtk/pkg-descr new file mode 100644 index 000000000000..669e30d7b21f --- /dev/null +++ b/science/csvtk/pkg-descr @@ -0,0 +1,13 @@ +CSV/TSV formats are basic and ubiquitous file formats in both Bioinformatics +and data science. + +People usually use spreadsheet software like MS Excel to process table data. +However this is all by clicking and typing, which is not automated and is +time-consuming to repeat, especially when you want to apply similar operations +with different datasets or purposes. + +csvtk is convenient for rapid data investigation and also easy to integrate +into analysis pipelines. It could save you lots of time in (not) writing +Python/R scripts. + +WWW: https://bioinf.shenwei.me/csvtk/