Date: Sun, 13 Sep 2020 21:07:03 GMT From: pkg-fallout@FreeBSD.org To: yuri@FreeBSD.org Cc: pkg-fallout@FreeBSD.org Subject: [package - head-i386-default][biology/ncbi-cxx-toolkit] Failed for ncbi-cxx-toolkit-21.0.0_2 in configure Message-ID: <202009132107.08DL73Cj051475@beefy17.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Last committer: zeising@FreeBSD.org Ident: $FreeBSD: head/biology/ncbi-cxx-toolkit/Makefile 516742 2019-11-04 21:08:20Z zeising $ Log URL: http://beefy17.nyi.freebsd.org/data/head-i386-default/p548441_s365678/logs/ncbi-cxx-toolkit-21.0.0_2.log Build URL: http://beefy17.nyi.freebsd.org/build.html?mastername=head-i386-default&build=p548441_s365678 Log: =>> Building biology/ncbi-cxx-toolkit build started at Sun Sep 13 21:06:43 UTC 2020 port directory: /usr/ports/biology/ncbi-cxx-toolkit package name: ncbi-cxx-toolkit-21.0.0_2 building for: FreeBSD head-i386-default-job-07 13.0-CURRENT FreeBSD 13.0-CURRENT 1300114 i386 maintained by: yuri@FreeBSD.org Makefile ident: $FreeBSD: head/biology/ncbi-cxx-toolkit/Makefile 516742 2019-11-04 21:08:20Z zeising $ Poudriere version: 3.2.8-5-gc81843e5 Host OSVERSION: 1300100 Jail OSVERSION: 1300114 Job Id: 07 !!! Jail is newer than host. (Jail: 1300114, Host: 1300100) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh UNAME_p=i386 UNAME_m=i386 OSVERSION=1300114 UNAME_v=FreeBSD 13.0-CURRENT 1300114 UNAME_r=13.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-5-gc81843e5 MASTERMNT=/usr/local/poudriere/data/.m/head-i386-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/head-i386-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=head-i386-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/head-i386-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --without-debug --with-dll --without-static --x-libraries=/usr/local/lib --x-includes=/usr/local/include --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 PYTHON="/usr/local/bin/python3.7" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work HOME=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288 --End CONFIGURE_ENV-- --MAKE_ENV-- PERL_USE_UNSAFE_INC=1 OPENSSLBASE=/usr OPENSSLDIR=/etc/ssl OPENSSLINC=/usr/include OPENSSLLIB=/usr/lib XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work HOME=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.7m PYTHON_LIBDIR=lib/python3.7 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=lib/python3.7/site-packages PYTHON_SUFFIX=37 PYTHON_VER=3.7 PYTHON_VERSION=python3.7 PYTHON2="@comment " PYTHON3="" OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.32.0 PERL_VER=5.32 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.32 DOCSDIR="share/doc/ncbi-cxx-toolkit" EXAMPLESDIR="share/examples/ncbi-cxx-toolkit" DATADIR="share/ncbi-cxx-toolkit" WWWDIR="www/ncbi-cxx-toolkit" ETCDIR="etc/ncbi-cxx-toolkit" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/ncbi-cxx-toolkit DOCSDIR=/usr/local/share/doc/ncbi-cxx-toolkit EXAMPLESDIR=/usr/local/share/examples/ncbi-cxx-toolkit WWWDIR=/usr/local/www/ncbi-cxx-toolkit ETCDIR=/usr/local/etc/ncbi-cxx-toolkit --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=i386 MACHINE_ARCH=i386 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 11.0.0 (git@github.com:llvm/llvm-project.git llvmorg-11.0.0-rc2-0-g414f32a9e86) Target: i386-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 11.0.0 (git@github.com:llvm/llvm-project.git llvmorg-11.0.0-rc2-0-g414f32a9e86) Target: i386-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-m" "elf_i386_fbsd" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 11.0.0 (git@github.com:llvm/llvm-project.git llvmorg-11.0.0-rc2-0-g414f32a9e86) Target: i386-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=i386 OPSYS=FreeBSD _OSRELEASE=13.0-CURRENT OSREL=13.0 OSVERSION=1300114 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 524288 stack size (kbytes, -s) 65536 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License PD accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> ncbi-cxx-toolkit-21.0.0_2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.15.4.txz [head-i386-default-job-07] Installing pkg-1.15.4... [head-i386-default-job-07] Extracting pkg-1.15.4: .......... done ===> ncbi-cxx-toolkit-21.0.0_2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of ncbi-cxx-toolkit-21.0.0_2 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License PD accepted by the user ===> Fetching all distfiles required by ncbi-cxx-toolkit-21.0.0_2 for building =========================================================================== =======================<phase: checksum >============================ ===> License PD accepted by the user ===> Fetching all distfiles required by ncbi-cxx-toolkit-21.0.0_2 for building => SHA256 Checksum OK for ncbi_cxx--21_0_0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License PD accepted by the user ===> Fetching all distfiles required by ncbi-cxx-toolkit-21.0.0_2 for building ===> Extracting for ncbi-cxx-toolkit-21.0.0_2 => SHA256 Checksum OK for ncbi_cxx--21_0_0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for ncbi-cxx-toolkit-21.0.0_2 ===> Applying FreeBSD patches for ncbi-cxx-toolkit-21.0.0_2 from /usr/ports/biology/ncbi-cxx-toolkit/files =========================================================================== =======================<phase: build-depends >============================ ===> ncbi-cxx-toolkit-21.0.0_2 depends on package: gmake>=4.3 - not found ===> Installing existing package /packages/All/gmake-4.3_2.txz [head-i386-default-job-07] Installing gmake-4.3_2... [head-i386-default-job-07] `-- Installing gettext-runtime-0.21... [head-i386-default-job-07] | `-- Installing indexinfo-0.3.1... [head-i386-default-job-07] | `-- Extracting indexinfo-0.3.1: .... done <snip> ===> ncbi-cxx-toolkit-21.0.0_2 depends on file: /usr/local/bin/python3.7 - not found ===> Installing existing package /packages/All/python37-3.7.9.txz [head-i386-default-job-07] Installing python37-3.7.9... [head-i386-default-job-07] `-- Installing libffi-3.3_1... [head-i386-default-job-07] `-- Extracting libffi-3.3_1: .......... done [head-i386-default-job-07] `-- Installing readline-8.0.4... [head-i386-default-job-07] `-- Extracting readline-8.0.4: .......... done [head-i386-default-job-07] Extracting python37-3.7.9: .......... done ===== Message from python37-3.7.9: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py37-gdbm databases/py-gdbm@py37 py37-sqlite3 databases/py-sqlite3@py37 py37-tkinter x11-toolkits/py-tkinter@py37 ===> ncbi-cxx-toolkit-21.0.0_2 depends on file: /usr/local/bin/python3.7 - found ===> Returning to build of ncbi-cxx-toolkit-21.0.0_2 ===> ncbi-cxx-toolkit-21.0.0_2 depends on package: perl5>=5.32.r0<5.33 - not found ===> Installing existing package /packages/All/perl5-5.32.0.txz [head-i386-default-job-07] Installing perl5-5.32.0... [head-i386-default-job-07] Extracting perl5-5.32.0: .......... done ===> ncbi-cxx-toolkit-21.0.0_2 depends on package: perl5>=5.32.r0<5.33 - found ===> Returning to build of ncbi-cxx-toolkit-21.0.0_2 ===> ncbi-cxx-toolkit-21.0.0_2 depends on file: /usr/local/libdata/pkgconfig/x11.pc - not found ===> Installing existing package /packages/All/libX11-1.6.12,1.txz [head-i386-default-job-07] Installing libX11-1.6.12,1... [head-i386-default-job-07] `-- Installing libxcb-1.13.1... [head-i386-default-job-07] | `-- Installing libXau-1.0.9... [head-i386-default-job-07] | `-- Extracting libXau-1.0.9: .......... done [head-i386-default-job-07] | `-- Installing libXdmcp-1.1.3... [head-i386-default-job-07] | | `-- Installing xorgproto-2020.1... [head-i386-default-job-07] | | `-- Extracting xorgproto-2020.1: .......... done [head-i386-default-job-07] | `-- Extracting libXdmcp-1.1.3: ......... done [head-i386-default-job-07] | `-- Installing libpthread-stubs-0.4... [head-i386-default-job-07] | `-- Extracting libpthread-stubs-0.4: .... done [head-i386-default-job-07] | `-- Installing libxml2-2.9.10... [head-i386-default-job-07] | `-- Extracting libxml2-2.9.10: .......... done [head-i386-default-job-07] `-- Extracting libxcb-1.13.1: .......... done [head-i386-default-job-07] Extracting libX11-1.6.12,1: .......... done ===> ncbi-cxx-toolkit-21.0.0_2 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found ===> Returning to build of ncbi-cxx-toolkit-21.0.0_2 ===> ncbi-cxx-toolkit-21.0.0_2 depends on file: /usr/local/libdata/pkgconfig/xpm.pc - not found ===> Installing existing package /packages/All/libXpm-3.5.13.txz [head-i386-default-job-07] Installing libXpm-3.5.13... [head-i386-default-job-07] `-- Installing libXext-1.3.4,1... [head-i386-default-job-07] `-- Extracting libXext-1.3.4,1: .......... done [head-i386-default-job-07] `-- Installing libXt-1.2.0,1... [head-i386-default-job-07] | `-- Installing libICE-1.0.10,1... [head-i386-default-job-07] | `-- Extracting libICE-1.0.10,1: .......... done [head-i386-default-job-07] | `-- Installing libSM-1.2.3,1... [head-i386-default-job-07] | `-- Extracting libSM-1.2.3,1: .......... done [head-i386-default-job-07] `-- Extracting libXt-1.2.0,1: .......... done [head-i386-default-job-07] Extracting libXpm-3.5.13: .......... done ===> ncbi-cxx-toolkit-21.0.0_2 depends on file: /usr/local/libdata/pkgconfig/xpm.pc - found ===> Returning to build of ncbi-cxx-toolkit-21.0.0_2 =========================================================================== =======================<phase: lib-depends >============================ ===> ncbi-cxx-toolkit-21.0.0_2 depends on shared library: libpcre.so - not found ===> Installing existing package /packages/All/pcre-8.44.txz [head-i386-default-job-07] Installing pcre-8.44... [head-i386-default-job-07] Extracting pcre-8.44: .......... done ===> ncbi-cxx-toolkit-21.0.0_2 depends on shared library: libpcre.so - found (/usr/local/lib/libpcre.so) ===> Returning to build of ncbi-cxx-toolkit-21.0.0_2 ===> ncbi-cxx-toolkit-21.0.0_2 depends on shared library: libmysqlclient.so.20 - not found ===> Installing existing package /packages/All/mysql57-client-5.7.31_1.txz [head-i386-default-job-07] Installing mysql57-client-5.7.31_1... [head-i386-default-job-07] `-- Installing curl-7.72.0... [head-i386-default-job-07] | `-- Installing ca_root_nss-3.56... [head-i386-default-job-07] | `-- Extracting ca_root_nss-3.56: ........ done [head-i386-default-job-07] | `-- Installing libnghttp2-1.41.0... [head-i386-default-job-07] | `-- Extracting libnghttp2-1.41.0: .......... done [head-i386-default-job-07] `-- Extracting curl-7.72.0: .......... done [head-i386-default-job-07] `-- Installing cyrus-sasl-2.1.27_1... *** Added group `cyrus' (id 60) *** Added user `cyrus' (id 60) [head-i386-default-job-07] `-- Extracting cyrus-sasl-2.1.27_1: .......... done [head-i386-default-job-07] `-- Installing groff-1.22.4_3... [head-i386-default-job-07] | `-- Installing psutils-1.17_5... [head-i386-default-job-07] | | `-- Installing libpaper-1.1.24.4... [head-i386-default-job-07] | | `-- Extracting libpaper-1.1.24.4: .......... done [head-i386-default-job-07] | `-- Extracting psutils-1.17_5: .......... done [head-i386-default-job-07] | `-- Installing uchardet-0.0.7... [head-i386-default-job-07] | `-- Extracting uchardet-0.0.7: .......... done [head-i386-default-job-07] `-- Extracting groff-1.22.4_3: .......... done [head-i386-default-job-07] `-- Installing libedit-3.1.20191231,1... [head-i386-default-job-07] `-- Extracting libedit-3.1.20191231,1: .......... done [head-i386-default-job-07] `-- Installing libevent-2.1.12... [head-i386-default-job-07] `-- Extracting libevent-2.1.12: .......... done [head-i386-default-job-07] `-- Installing liblz4-1.9.2_1,1... [head-i386-default-job-07] `-- Extracting liblz4-1.9.2_1,1: .......... done [head-i386-default-job-07] `-- Installing protobuf-3.13.0,1... [head-i386-default-job-07] `-- Extracting protobuf-3.13.0,1: .......... done [head-i386-default-job-07] Extracting mysql57-client-5.7.31_1: .......... done ===== Message from ca_root_nss-3.56: -- FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem ===== Message from cyrus-sasl-2.1.27_1: -- You can use sasldb2 for authentication, to add users use: saslpasswd2 -c username If you want to enable SMTP AUTH with the system Sendmail, read Sendmail.README NOTE: This port has been compiled with a default pwcheck_method of auxprop. If you want to authenticate your user by /etc/passwd, PAM or LDAP, install ports/security/cyrus-sasl2-saslauthd and set sasl_pwcheck_method to saslauthd after installing the Cyrus-IMAPd 2.X port. You should also check the /usr/local/lib/sasl2/*.conf files for the correct pwcheck_method. If you want to use GSSAPI mechanism, install ports/security/cyrus-sasl2-gssapi. If you want to use SRP mechanism, install ports/security/cyrus-sasl2-srp. If you want to use LDAP auxprop plugin, install ports/security/cyrus-sasl2-ldapdb. ===== Message from groff-1.22.4_3: -- In order to be able to use the html driver, you need to install the following packages: - ghostscript - netpbm ===== Message from mysql57-client-5.7.31_1: -- This is the mysql CLIENT without the server. for complete server and client, please install databases/mysql57-server ===> ncbi-cxx-toolkit-21.0.0_2 depends on shared library: libmysqlclient.so.20 - found (/usr/local/lib/mysql/libmysqlclient.so.20) ===> Returning to build of ncbi-cxx-toolkit-21.0.0_2 =========================================================================== =======================<phase: configure >============================ ===> Configuring for ncbi-cxx-toolkit-21.0.0_2 configure: loading site script /usr/ports/Templates/config.site configure: creating cache config.cache checking TeamCity build number... none checking Subversion revision... unknown checking NCBI stable components' version... unknown checking build system type... i386-portbld-freebsd13.0 checking host system type... i386-portbld-freebsd13.0 checking for a BSD-compatible install... /usr/bin/install -c checking for gcc... cc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking how to run the C preprocessor... cpp checking for gcc... no checking for cc... cc checking whether we are using the GNU C compiler... (cached) yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking how to run the C preprocessor... cc -E checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes configure: error: Do not know how to parse GCC version number 11.0.0 ===> Script "configure" failed unexpectedly. Please report the problem to yuri@FreeBSD.org [maintainer] and attach the "/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi_cxx--21_0_0/config.log" including the output of the failure of your make command. Also, it might be a good idea to provide an overview of all packages installed on your system (e.g. a /usr/local/sbin/pkg-static info -g -Ea). *** Error code 1 Stop. make: stopped in /usr/ports/biology/ncbi-cxx-toolkit
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