Date: Sun, 27 Dec 2020 21:48:45 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - head-powerpc64-default][science/rdkit] Failed for rdkit-2020.09.3 in package Message-ID: <202012272148.0BRLmjek032748@pylon.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Last committer: yuri@FreeBSD.org Ident: $FreeBSD: head/science/rdkit/Makefile 558009 2020-12-13 22:00:58Z yuri $ Log URL: http://pylon.nyi.freebsd.org/data/head-powerpc64-default/p558707_s368819/logs/rdkit-2020.09.3.log Build URL: http://pylon.nyi.freebsd.org/build.html?mastername=head-powerpc64-default&build=p558707_s368819 Log: =>> Building science/rdkit build started at Sun Dec 27 19:52:53 UTC 2020 port directory: /usr/ports/science/rdkit package name: rdkit-2020.09.3 building for: FreeBSD head-powerpc64-default-job-13 13.0-CURRENT FreeBSD 13.0-CURRENT 1300132 powerpc maintained by: yuri@FreeBSD.org Makefile ident: $FreeBSD: head/science/rdkit/Makefile 558009 2020-12-13 22:00:58Z yuri $ Poudriere version: 3.2.8-8-gaf08dbda Host OSVERSION: 1300121 Jail OSVERSION: 1300132 Job Id: 13 !!! Jail is newer than host. (Jail: 1300132, Host: 1300121) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh OSVERSION=1300132 UNAME_v=FreeBSD 13.0-CURRENT 1300132 UNAME_r=13.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-8-gaf08dbda MASTERMNT=/usr/local/poudriere/data/.m/head-powerpc64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/head-powerpc64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=head-powerpc64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/head-powerpc64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for rdkit-2020.09.3: DOCS=on: Build and/or install documentation PYTHON=on: Python bindings or support ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.7" XDG_DATA_HOME=/wrkdirs/usr/ports/science/rdkit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/rdkit/work HOME=/wrkdirs/usr/ports/science/rdkit/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/rdkit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/rdkit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/rdkit/work HOME=/wrkdirs/usr/ports/science/rdkit/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/rdkit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/science/rdkit/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- SHLIB_VER=2020.09.3 PORTDOCS="" DOCS="" NO_DOCS="@comment " PYTHON="" NO_PYTHON="@comment " LITTLE_ENDIAN="@comment " CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python3.7m PYTHON_LIBDIR=lib/python3.7 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=lib/python3.7/site-packages PYTHON_SUFFIX=37 PYTHON_VER=3.7 PYTHON_VERSION=python3.7 PYTHON2="@comment " PYTHON3="" OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/RDKit" EXAMPLESDIR="share/examples/rdkit" DATADIR="share/RDKit" WWWDIR="www/rdkit" ETCDIR="etc/rdkit" --End PLIST_SUB-- --SUB_LIST-- DOCS="" NO_DOCS="@comment " PYTHON="" NO_PYTHON="@comment " PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/RDKit DOCSDIR=/usr/local/share/doc/RDKit EXAMPLESDIR=/usr/local/share/examples/rdkit WWWDIR=/usr/local/www/rdkit ETCDIR=/usr/local/etc/rdkit --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 11.0.0 (git@github.com:llvm/llvm-project.git llvmorg-11.0.0-0-g176249bd673) Target: powerpc64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 11.0.0 (git@github.com:llvm/llvm-project.git llvmorg-11.0.0-0-g176249bd673) Target: powerpc64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 11.0.0 (git@github.com:llvm/llvm-project.git llvmorg-11.0.0-0-g176249bd673) Target: powerpc64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=powerpc64 PPC_ABI=ELFv2 OPSYS=FreeBSD _OSRELEASE=13.0-CURRENT OSREL=13.0 OSVERSION=1300132 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License BSD3CLAUSE accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> rdkit-2020.09.3 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.15.10.txz [head-powerpc64-default-job-13] Installing pkg-1.15.10... [head-powerpc64-default-job-13] Extracting pkg-1.15.10: .......... done ===> rdkit-2020.09.3 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of rdkit-2020.09.3 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License BSD3CLAUSE accepted by the user => rdkit-rdkit-Release_2020_09_3_GH0.tar.gz doesn't seem to exist in /portdistfiles/. => Attempting to fetch https://codeload.github.com/rdkit/rdkit/tar.gz/Release_2020_09_3?dummy=/rdkit-rdkit-Release_2020_09_3_GH0.tar.gz fetch: https://codeload.github.com/rdkit/rdkit/tar.gz/Release_2020_09_3?dummy=/rdkit-rdkit-Release_2020_09_3_GH0.tar.gz: size unknown fetch: https://codeload.github.com/rdkit/rdkit/tar.gz/Release_2020_09_3?dummy=/rdkit-rdkit-Release_2020_09_3_GH0.tar.gz: size of remote file is not known rdkit-rdkit-Release_2020_09_3_GH0.tar.gz 55 MB 11 MBps 05s => rareylab-RingDecomposerLib-v1.1.3_rdkit_GH0.tar.gz doesn't seem to exist in /portdistfiles/. => Attempting to fetch https://codeload.github.com/rareylab/RingDecomposerLib/tar.gz/v1.1.3_rdkit?dummy=/rareylab-RingDecomposerLib-v1.1.3_rdkit_GH0.tar.gz fetch: https://codeload.github.com/rareylab/RingDecomposerLib/tar.gz/v1.1.3_rdkit?dummy=/rareylab-RingDecomposerLib-v1.1.3_rdkit_GH0.tar.gz: size unknown fetch: https://codeload.github.com/rareylab/RingDecomposerLib/tar.gz/v1.1.3_rdkit?dummy=/rareylab-RingDecomposerLib-v1.1.3_rdkit_GH0.tar.gz: size of remote file is not known rareylab-RingDecomposerLib-v1.1.3_rdkit_GH0.tar.gz 134 kB 5287 kBps 00s ===> Fetching all distfiles required by rdkit-2020.09.3 for building =========================================================================== =======================<phase: checksum >============================ ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by rdkit-2020.09.3 for building => SHA256 Checksum OK for rdkit-rdkit-Release_2020_09_3_GH0.tar.gz. => SHA256 Checksum OK for rareylab-RingDecomposerLib-v1.1.3_rdkit_GH0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by rdkit-2020.09.3 for building ===> Extracting for rdkit-2020.09.3 => SHA256 Checksum OK for rdkit-rdkit-Release_2020_09_3_GH0.tar.gz. => SHA256 Checksum OK for rareylab-RingDecomposerLib-v1.1.3_rdkit_GH0.tar.gz. <snip> -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolDraw2D/MolDraw2DUtils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolDraw2D/DrawText.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolDraw2D/DrawTextSVG.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolDraw2D/DrawTextJS.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolDraw2D.so.1.2020.09.3 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolDraw2D.so.1 -- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolDraw2D.so.1.2020.09.3" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolDraw2D.so -- Up-to-date: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolDraw2D/DrawText.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolDraw2D/DrawTextFT.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolDraw2D/DrawTextFTSVG.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolDraw2D/DrawTextFTJS.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/Draw/rdMolDraw2D.so -- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/Draw/rdMolDraw2D.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFMCS.so.1.2020.09.3 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFMCS.so.1 -- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFMCS.so.1.2020.09.3" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFMCS.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FMCS/FMCS.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FMCS/Graph.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdFMCS.so -- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdFMCS.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolHash.so.1.2020.09.3 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolHash.so.1 -- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolHash.so.1.2020.09.3" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolHash.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolHash/MolHash.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolHash/nmmolhash.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdMolHash.so -- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdMolHash.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMMPA.so.1.2020.09.3 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMMPA.so.1 -- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMMPA.so.1.2020.09.3" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMMPA.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MMPA/MMPA.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdMMPA.so -- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdMMPA.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitCIPLabeler.so.1.2020.09.3 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitCIPLabeler.so.1 -- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitCIPLabeler.so.1.2020.09.3" to "" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitCIPLabeler.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/CIPLabeler/CIPLabeler.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdCIPLabeler.so -- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdCIPLabeler.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDeprotect.so.1.2020.09.3 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDeprotect.so.1 -- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDeprotect.so.1.2020.09.3" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDeprotect.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Deprotect/Deprotect.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdDeprotect.so -- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdDeprotect.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitReducedGraphs.so.1.2020.09.3 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitReducedGraphs.so.1 -- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitReducedGraphs.so.1.2020.09.3" to "" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitReducedGraphs.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ReducedGraphs/ReducedGraphs.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdReducedGraphs.so -- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdReducedGraphs.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitTrajectory.so.1.2020.09.3 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitTrajectory.so.1 -- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitTrajectory.so.1.2020.09.3" to "" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitTrajectory.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Trajectory/Snapshot.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Trajectory/Trajectory.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSubstructLibrary.so.1.2020.09.3 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSubstructLibrary.so.1 -- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSubstructLibrary.so.1.2020.09.3" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSubstructLibrary.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SubstructLibrary/SubstructLibrary.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SubstructLibrary/SubstructLibrarySerialization.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SubstructLibrary/PatternFactory.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdSubstructLibrary.so -- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdSubstructLibrary.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRGroupDecomposition.so.1.2020.09.3 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRGroupDecomposition.so.1 -- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRGroupDecomposition.so.1.2020.09.3" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRGroupDecomposition.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/RGroupDecomposition/RGroupDecomp.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdRGroupDecomposition.so -- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdRGroupDecomposition.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolInterchange.so.1.2020.09.3 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolInterchange.so.1 -- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolInterchange.so.1.2020.09.3" to "" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolInterchange.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolInterchange/MolInterchange.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolInterchange/details.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdMolInterchange.so -- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdMolInterchange.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSLNParse.so.1.2020.09.3 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSLNParse.so.1 -- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSLNParse.so.1.2020.09.3" to "" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSLNParse.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SLNParse/SLNAttribs.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SLNParse/SLNParse.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SLNParse/SLNParseOps.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdSLNParse.so -- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdSLNParse.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdchem.so -- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdchem.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdmolops.so -- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdmolops.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdqueries.so -- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdqueries.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdmolfiles.so -- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdmolfiles.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdtrajectory.so -- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdtrajectory.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolStandardize.so.1.2020.09.3 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolStandardize.so.1 -- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolStandardize.so.1.2020.09.3" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolStandardize.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/MolStandardize.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/Metal.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/Normalize.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/Validate.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/Charge.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/Tautomer.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/Fragment.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogEntry.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogParams.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogUtils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogEntry.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogParams.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogUtils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/TransformCatalog/TransformCatalogEntry.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/TransformCatalog/TransformCatalogParams.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/TransformCatalog/TransformCatalogUtils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogEntry.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogParams.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogUtils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/MolStandardize/rdMolStandardize.so -- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/MolStandardize/rdMolStandardize.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitScaffoldNetwork.so.1.2020.09.3 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitScaffoldNetwork.so.1 -- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitScaffoldNetwork.so.1.2020.09.3" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitScaffoldNetwork.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ScaffoldNetwork/ScaffoldNetwork.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/Scaffolds/rdScaffoldNetwork.so -- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/Scaffolds/rdScaffoldNetwork.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolEnumerator.so.1.2020.09.3 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolEnumerator.so.1 -- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolEnumerator.so.1.2020.09.3" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolEnumerator.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolEnumerator/MolEnumerator.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdMolEnumerator.so -- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdMolEnumerator.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitAbbreviations.so.1.2020.09.3 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitAbbreviations.so.1 -- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitAbbreviations.so.1.2020.09.3" to "" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitAbbreviations.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Abbreviations/Abbreviations.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdAbbreviations.so -- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdAbbreviations.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/AndQuery.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/EqualityQuery.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/GreaterEqualQuery.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/GreaterQuery.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/LessEqualQuery.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/LessQuery.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/NullQueryAlgebra.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/OrQuery.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/Query.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/QueryObjects.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/RangeQuery.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/SetQuery.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/XOrQuery.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Features/Feature.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DataManip/MetricMatrixCalc/MetricFuncs.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DataManip/MetricMatrixCalc/MetricMatrixCalc.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so -- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitInfoTheory.so.1.2020.09.3 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitInfoTheory.so.1 -- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitInfoTheory.so.1.2020.09.3" to "" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitInfoTheory.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/ML/InfoTheory/rdInfoTheory.so -- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/ML/InfoTheory/rdInfoTheory.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/ML/Data/cQuantize.so -- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/ML/Data/cQuantize.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemicalFeatures.so.1.2020.09.3 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemicalFeatures.so.1 -- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemicalFeatures.so.1.2020.09.3" to "" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemicalFeatures.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ChemicalFeatures/ChemicalFeature.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ChemicalFeatures/FreeChemicalFeature.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdChemicalFeatures.so -- Set runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/Chem/rdChemicalFeatures.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.7/site-packages/rdkit/RDPaths.py ====> Compressing man pages (compress-man) =========================================================================== =======================<phase: package >============================ ===> Building package for rdkit-2020.09.3 pkg-static: Unable to access file /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/SimDivPickers/DistPicker.h:No such file or directory pkg-static: Unable to access file /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/SimDivPickers/HierarchicalClusterPicker.h:No such file or directory pkg-static: Unable to access file /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/SimDivPickers/LeaderPicker.h:No such file or directory pkg-static: Unable to access file /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/SimDivPickers/MaxMinPicker.h:No such file or directory *** Error code 1 Stop. make: stopped in /usr/ports/science/rdkit
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