From owner-svn-ports-all@freebsd.org Fri Sep 4 11:30:41 2020 Return-Path: Delivered-To: svn-ports-all@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id 534203DE01F; Fri, 4 Sep 2020 11:30:41 +0000 (UTC) (envelope-from fernape@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4Bjb8K1B5kz3cs4; Fri, 4 Sep 2020 11:30:41 +0000 (UTC) (envelope-from fernape@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 0A1A4C003; Fri, 4 Sep 2020 11:30:41 +0000 (UTC) (envelope-from fernape@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id 084BUesW042247; Fri, 4 Sep 2020 11:30:40 GMT (envelope-from fernape@FreeBSD.org) Received: (from fernape@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id 084BUe9V042246; Fri, 4 Sep 2020 11:30:40 GMT (envelope-from fernape@FreeBSD.org) Message-Id: <202009041130.084BUe9V042246@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: fernape set sender to fernape@FreeBSD.org using -f From: =?UTF-8?Q?Fernando_Apestegu=c3=ada?= Date: Fri, 4 Sep 2020 11:30:40 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-branches@freebsd.org Subject: svn commit: r547531 - branches/2020Q3/biology/mapm3 X-SVN-Group: ports-branches X-SVN-Commit-Author: fernape X-SVN-Commit-Paths: branches/2020Q3/biology/mapm3 X-SVN-Commit-Revision: 547531 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-all@freebsd.org X-Mailman-Version: 2.1.33 Precedence: list List-Id: SVN commit messages for the ports tree List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Fri, 04 Sep 2020 11:30:41 -0000 Author: fernape Date: Fri Sep 4 11:30:40 2020 New Revision: 547531 URL: https://svnweb.freebsd.org/changeset/ports/547531 Log: MFH: r547530 biology/mapm3: Fix build with llvm11, gcc10 Another instance of -fno-common issue. While here: * strip executables * add license PR: 249077 Submitted by: tphilipp@potion-studios.com (maintainer) Approved by: ports-secteam (blanket, build fix, -fno-common) Modified: branches/2020Q3/biology/mapm3/Makefile Directory Properties: branches/2020Q3/ (props changed) Modified: branches/2020Q3/biology/mapm3/Makefile ============================================================================== --- branches/2020Q3/biology/mapm3/Makefile Fri Sep 4 11:28:24 2020 (r547530) +++ branches/2020Q3/biology/mapm3/Makefile Fri Sep 4 11:30:40 2020 (r547531) @@ -3,28 +3,38 @@ PORTNAME= mapm3 PORTVERSION= 3.0 +PORTREVISION= 1 CATEGORIES= biology MASTER_SITES= http://www.broad.mit.edu/ftp/distribution/software/mapmaker3/ \ ftp://ftp.ibiblio.org/pub/academic/biology/molbio/mapmaker/ \ http://iubio.bio.indiana.edu/soft/molbio/qtl/mapmaker/ \ http://www.mirrorservice.org/sites/iubio.bio.indiana.edu/molbio/qtl/mapmaker/ DISTNAME= mapm3-source -EXTRACT_SUFX= .tar.Z MAINTAINER= tphilipp@potion-studios.com COMMENT= Constructs linkage maps of markers segregating in experimental crosses -USES= ncurses +LICENSE= MAPMAKER +LICENSE_NAME= Whitehead Institute Mapmaker license +LICENSE_FILE= ${WRKSRC}/READ.ME +LICENSE_PERMS= dist-mirror no-dist-sell pkg-mirror no-pkg-sell auto-accept + +USES= ncurses tar:Z USE_CSTD= gnu89 -CFLAGS+= -Wno-return-type -NO_WRKSUBDIR= yes + MAKE_ARGS+= SYS_LIBS="${LDFLAGS} -lm -lncurses" MAKE_JOBS_UNSAFE= yes +CFLAGS+= -fcommon -Wno-return-type +NO_WRKSUBDIR= yes post-patch: ${CP} ${WRKSRC}/sun/* ${WRKSRC} pre-install: @${REINPLACE_CMD} -e 's|/usr/local|${STAGEDIR}${PREFIX}|' ${WRKSRC}/Makefile + +post-install: + ${STRIP_CMD} ${STAGEDIR}${PREFIX}/bin/mapmaker + ${STRIP_CMD} ${STAGEDIR}${PREFIX}/bin/qtl .include