From owner-freebsd-ports@freebsd.org Thu Jun 29 15:40:05 2017 Return-Path: Delivered-To: freebsd-ports@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 72CFAD9FC3C for ; Thu, 29 Jun 2017 15:40:05 +0000 (UTC) (envelope-from jrm@ftfl.ca) Received: from mail-qt0-f174.google.com (mail-qt0-f174.google.com [209.85.216.174]) (using TLSv1.2 with cipher ECDHE-RSA-AES128-GCM-SHA256 (128/128 bits)) (Client CN "smtp.gmail.com", Issuer "Google Internet Authority G2" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 385EB64046 for ; Thu, 29 Jun 2017 15:40:04 +0000 (UTC) (envelope-from jrm@ftfl.ca) Received: by mail-qt0-f174.google.com with SMTP id r30so77628524qtc.0 for ; Thu, 29 Jun 2017 08:40:04 -0700 (PDT) X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:references:date:message-id :user-agent:mime-version; bh=EwCRnclrYwLqjla2MuYbOgLuPZN93HW5tsMSvt9hZOc=; b=EzhCj8Eh2dsK8SVCUsXq5p6Be623NKeqFDqB9XV9ykR59tO+9okQ6eNG0R0wp+B0z0 83q1yjr5jplWnyBGPcOeB/CgbM2lwqaFGN+gfgONpcdOI6V4v71sKZLVX4eL/+G4Berz OBqAhz4AXyBq/3CUr2rIQ5+7L37VpXMqqfuEttDv4xOXINHgCdhzfI50gjpeqvrZBAYP s3zMz9BIJKAMZwLpmEyzlKBhXreVuI3p+h31XCgEE3udjA0/+UW781+iXKWrE5z5zCrr lUsw+NZ9GZ6js1iRZi2fRjTIftVpC+b/LE2XV5QkJji6Z29JYNBQC0FsrTKmgdAA26Mw BCVw== X-Gm-Message-State: AKS2vOz8Bkz1R/avbgfkLRfULUiDQBARnDNTP+VaXWzh+D6oxGTZfN+E AFDsrmUU+1Sb64Vh9Zad4A== X-Received: by 10.200.53.151 with SMTP id k23mr21599065qtb.104.1498750798249; Thu, 29 Jun 2017 08:39:58 -0700 (PDT) Received: from phe.ftfl.ca.ftfl.ca (hlfxns017vw-142-68-134-140.dhcp-dynamic.fibreop.ns.bellaliant.net. [142.68.134.140]) by smtp.gmail.com with ESMTPSA id w8sm4452659qtb.53.2017.06.29.08.39.56 (version=TLS1_2 cipher=ECDHE-RSA-CHACHA20-POLY1305 bits=256/256); Thu, 29 Jun 2017 08:39:57 -0700 (PDT) From: Joseph Mingrone To: David Wolfskill Cc: freebsd-ports@freebsd.org Subject: Re: math/R: Build failure after PORTREVISION for shlib change References: <20170628120843.GG1241@albert.catwhisker.org> <86y3sbdhvx.fsf@phe.ftfl.ca> <20170628195155.GC1241@albert.catwhisker.org> Date: Thu, 29 Jun 2017 12:39:50 -0300 Message-ID: <86lgoa9515.fsf@phe.ftfl.ca> User-Agent: Gnus/5.13 (Gnus v5.13) Emacs/25.2 (berkeley-unix) MIME-Version: 1.0 Content-Type: multipart/signed; boundary="=-=-="; micalg=pgp-sha512; protocol="application/pgp-signature" X-BeenThere: freebsd-ports@freebsd.org X-Mailman-Version: 2.1.23 Precedence: list List-Id: Porting software to FreeBSD List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Thu, 29 Jun 2017 15:40:05 -0000 --=-=-= Content-Type: text/plain Content-Transfer-Encoding: quoted-printable David Wolfskill writes: > g1-227(11.1)[2] make -C /usr/ports/math/R showconfig > =3D=3D=3D> The following configuration options are available for R-3.4.0_= 1: > ICU=3Don: Unicode support via ICU > INFO=3Don: GNU info manuals > LDOUBLE=3Don: Long double data type > LETTER=3Don: US letter paper > LIBR=3Don: Shared R library > MEMPROF=3Doff: Memory profiling via Rprofmem() and tracemem() > NLS=3Don: Native Language Support > RPROF=3Don: R profiling via Rprof() > X11=3Don: X11 graphics device > =3D=3D=3D=3D> Require GCC > LTO=3Don: Use Link Time Optimization > OPENMP=3Don: Parallel processing support via OpenMP > =3D=3D=3D=3D> Require X11 > GHOSTSCRIPT=3Don: Graphics device for bitmap files via Ghostscript > JPEG=3Don: JPEG graphics device > CAIROPANGO=3Don: Cairo graphics device and Pango multi-language text > PNG=3Don: PNG graphics device > TCLTK=3Don: Tcl/Tk GUI toolkit support > TEXDOCS=3Don: Build/Install TeX-dependent documentation files > TIFF=3Don: TIFF image format support > =3D=3D=3D=3D> Options available for the single BLAS: you have to select e= xactly one of them > ATLAS=3Doff: ATLAS BLAS implementation > OPENBLAS=3Doff: OpenBLAS BLAS implementation > NETLIB=3Doff: Netlib BLAS implementation > RBLAS=3Don: Use R-bundled BLAS implementation > =3D=3D=3D> Use 'make config' to modify these settings > g1-227(11.1)[3]=20 With those options, the build succeeds in an 11.0-RELEASE-p1 jail. http://pkg.awarnach.mathstat.dal.ca/data/11amd64-default/2017-06-28_16h53m4= 8s/logs/R-3.4.0_2.log > Just in case it's relevant, as /usr/local/bin/gcc-ar5 is from gcc5-5.4.0_= 2: > g1-227(11.1)[5] make -C /usr/ports/lang/gcc5 showconfig > =3D=3D=3D> The following configuration options are available for gcc5-5.4= .0_2: > BOOTSTRAP=3Don: Build using a full bootstrap > GRAPHITE=3Doff: Support for Graphite loop optimizations > JAVA=3Don: Java platform support > =3D=3D=3D> Use 'make config' to modify these settings Everything matches. The successful build in poudriere even has the same line that generates the error for you. /usr/local/bin/gcc-ar5 -cr libtre.a regcomp.o regerror.o regexec.o tre-ast.= o tre-compile.o tre-match-approx.o tre-match-backtrack.o tre-match-parallel= .o tre-mem.o tre-parse.o tre-stack.o xmalloc.o Could you have something in your environment or in make.conf that's causing a problem? 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