From owner-svn-ports-head@freebsd.org Thu Jan 14 22:04:30 2021 Return-Path: Delivered-To: svn-ports-head@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id 5D5094EF3E8; Thu, 14 Jan 2021 22:04:30 +0000 (UTC) (envelope-from rene@freebsd.org) Received: from freefall.freebsd.org (freefall.freebsd.org [96.47.72.132]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "freefall.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4DGyyk2GbGz3JZg; Thu, 14 Jan 2021 22:04:30 +0000 (UTC) (envelope-from rene@freebsd.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1610661870; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding: in-reply-to:in-reply-to:references:references; bh=cAmNnARjdtNiHWyWKv/44Ix4wmdsV32tTZCU02IZYwk=; b=uxKBuo+fwltnJ7ldDHXJB0B9zzZtnf9g1EYDpdv+2795nuuANlgkTlSM1sTfisnLqUSoMd WrUUHF2+7WiPnUBMKzeC+nM3ZaumCq66bbj8/udrjDCeYeTxLgo/0h7jlXVsV17WtOhTAR 318SDglYAaKHmQ0UqGjphRpY0zXOh50y9NzA0FgB4Et4lvFwZYDBrF6fitDYGbI1U/jNJH cxN+F9aXJspGR+yAsFuXEzYvfRqRrz+FlyEkCw/pHox0K1Fj7U7FCFB2cWuL+WUIPTb7lU xg59kqprmgs4V0jfSMVBlgIcWKEGo21PAMbDFt6sI7w7LWTKpUmNJFi/1CUkQA== Received: by freefall.freebsd.org (Postfix, from userid 1185) id 3CAE81A771; Thu, 14 Jan 2021 22:04:30 +0000 (UTC) Date: Thu, 14 Jan 2021 22:04:30 +0000 From: Rene Ladan To: "Jason W. Bacon" Cc: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: Re: svn commit: r561567 - head/biology/haplohseq Message-ID: <20210114220430.GA61223@freefall.freebsd.org> References: <202101141551.10EFpJqW084806@repo.freebsd.org> MIME-Version: 1.0 Content-Type: text/plain; charset=iso-8859-1 Content-Disposition: inline Content-Transfer-Encoding: 8bit In-Reply-To: <202101141551.10EFpJqW084806@repo.freebsd.org> ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1610661870; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding: in-reply-to:in-reply-to:references:references; bh=cAmNnARjdtNiHWyWKv/44Ix4wmdsV32tTZCU02IZYwk=; b=CpOBOX5dUSBlh6mO7d7rdtZ7s/obWOJGSjJbaggjipmpnWsjPDhHua34icGLyTwlMVpwgL SLCm0uQnWT36bkeB8XEc4iyM0FnBDVxg1w+NqczFKvbUCYJyDNTlOdAK9wwg3d0YdmwWeG XgaZTrtHTCH9Zc+Kk7z1Qd09H9Tv4NHYu6DJ5X1R9Ep9GLHCSHh1gPX1PZrUbARR/4FDG7 FLW2Tun8xzWVZjakMUac2LP3GcIW6NsbkUESfJsU8pOwblVUlc7qF8NAg9DUTqfp68zrKD W+kvUOZvgZ3PEn8CClf7FwP4Ts1BLyLeGsnB1SYM0jvGQ8z4P53ZLPEvBfl2bQ== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1610661870; a=rsa-sha256; cv=none; b=sJmFKPxJuOcaiMmoPV8lejlGzV68P0TNu9Z4PXi4TIjhaL3BBeTtsh3IzkWeDApfsgK+a1 jSXUK0boF+wlPuJm2XRmLvyIR43MysxAiwc3yN9I9vihL92dSuLoarKNKws9dkCxL246EA 3DXUa8LIgl3jeL7hpKI9kehPpjueJmxdSwB4CGWmEifuoCQSMK5KqVwHJvhOG5xS2+SONH MuPx1aHjOtY3hhMoS/yJXat7oVlIqfYG8nTc1EGOHZvheHgH0ke4Cm82A6siXr7YghJ4EQ 4qJRBnYPIVYXFaBvhpZBMphjMg/SYDz6jdcA0tZQdkP5ppflkDyo62xld/HX1Q== ARC-Authentication-Results: i=1; mx1.freebsd.org; none X-BeenThere: svn-ports-head@freebsd.org X-Mailman-Version: 2.1.34 Precedence: list List-Id: SVN commit messages for the ports tree for head List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Thu, 14 Jan 2021 22:04:30 -0000 Hi, On Thu, Jan 14, 2021 at 03:51:19PM +0000, Jason W. Bacon wrote: > Author: jwb > Date: Thu Jan 14 15:51:19 2021 > New Revision: 561567 > URL: https://svnweb.freebsd.org/changeset/ports/561567 > > Log: > biology/haplohseq: Resurrect and fix python2 dependency > > Move upstream to Github fork > > Added: > head/biology/haplohseq/ > - copied from r517828, head/biology/haplohseq/ > Modified: > head/biology/haplohseq/Makefile > head/biology/haplohseq/distinfo > > Modified: head/biology/haplohseq/Makefile > ============================================================================== > --- head/biology/haplohseq/Makefile Sun Nov 17 15:00:13 2019 (r517828) > +++ head/biology/haplohseq/Makefile Thu Jan 14 15:51:19 2021 (r561567) > @@ -2,9 +2,8 @@ > > PORTNAME= haplohseq > DISTVERSION= 0.1.2 > -PORTREVISION= 1 > +PORTREVISION= 2 > CATEGORIES= biology > -MASTER_SITES= https://acadix.biz/Ports/distfiles/ > > MAINTAINER= jwb@FreeBSD.org > COMMENT= Identify regions of allelic imbalance > @@ -14,7 +13,10 @@ LICENSE= MIT > LIB_DEPENDS= libboost_system.so:devel/boost-libs > RUN_DEPENDS= R-cran-optparse>0:devel/R-cran-optparse > > -USES= compiler:c++11-lang gmake localbase:ldflags python:2.7 tar:xz > +USES= compiler:c++11-lang gmake localbase:ldflags python It is better to use python:3.6+ here, as Python 2.7 is on its way out of the Ports Tree and USES=python (without any range) currently still acticvates support for it. [...] Thanks, René