From owner-svn-ports-all@freebsd.org Sun Dec 6 20:14:54 2020 Return-Path: Delivered-To: svn-ports-all@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id 25CB54A936D; Sun, 6 Dec 2020 20:14:54 +0000 (UTC) (envelope-from yuri@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4CpyNG0Ys0z4mQ1; Sun, 6 Dec 2020 20:14:54 +0000 (UTC) (envelope-from yuri@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 0626615C4F; Sun, 6 Dec 2020 20:14:54 +0000 (UTC) (envelope-from yuri@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id 0B6KErDj038211; Sun, 6 Dec 2020 20:14:53 GMT (envelope-from yuri@FreeBSD.org) Received: (from yuri@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id 0B6KEruL038208; Sun, 6 Dec 2020 20:14:53 GMT (envelope-from yuri@FreeBSD.org) Message-Id: <202012062014.0B6KEruL038208@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: yuri set sender to yuri@FreeBSD.org using -f From: Yuri Victorovich Date: Sun, 6 Dec 2020 20:14:53 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r557171 - in head/biology/viennarna: . files X-SVN-Group: ports-head X-SVN-Commit-Author: yuri X-SVN-Commit-Paths: in head/biology/viennarna: . files X-SVN-Commit-Revision: 557171 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-all@freebsd.org X-Mailman-Version: 2.1.34 Precedence: list List-Id: SVN commit messages for the ports tree List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sun, 06 Dec 2020 20:14:54 -0000 Author: yuri Date: Sun Dec 6 20:14:53 2020 New Revision: 557171 URL: https://svnweb.freebsd.org/changeset/ports/557171 Log: biology/viennarna: Update 2.4.16 -> 2.4.17 Deleted: head/biology/viennarna/files/patch-src_bin_Makefile.in Modified: head/biology/viennarna/Makefile head/biology/viennarna/distinfo head/biology/viennarna/pkg-plist Modified: head/biology/viennarna/Makefile ============================================================================== --- head/biology/viennarna/Makefile Sun Dec 6 20:08:16 2020 (r557170) +++ head/biology/viennarna/Makefile Sun Dec 6 20:14:53 2020 (r557171) @@ -1,7 +1,7 @@ # $FreeBSD$ PORTNAME= viennarna -DISTVERSION= 2.4.16 +DISTVERSION= 2.4.17 CATEGORIES= biology MASTER_SITES= https://www.tbi.univie.ac.at/RNA/download/sourcecode/2_4_x/ DISTNAME= ViennaRNA-${DISTVERSION} Modified: head/biology/viennarna/distinfo ============================================================================== --- head/biology/viennarna/distinfo Sun Dec 6 20:08:16 2020 (r557170) +++ head/biology/viennarna/distinfo Sun Dec 6 20:14:53 2020 (r557171) @@ -1,3 +1,3 @@ -TIMESTAMP = 1605136528 -SHA256 (ViennaRNA-2.4.16.tar.gz) = 4544211cf54d21a005256119aeee5db38b07bef8f7755711aca88d2f84d26f62 -SIZE (ViennaRNA-2.4.16.tar.gz) = 38820696 +TIMESTAMP = 1607284784 +SHA256 (ViennaRNA-2.4.17.tar.gz) = b1e608f6f37cdf4adbcdd1f86fd9ebfcc1e663d58488e0f8173a58879480c121 +SIZE (ViennaRNA-2.4.17.tar.gz) = 34680460 Modified: head/biology/viennarna/pkg-plist ============================================================================== --- head/biology/viennarna/pkg-plist Sun Dec 6 20:08:16 2020 (r557170) +++ head/biology/viennarna/pkg-plist Sun Dec 6 20:14:53 2020 (r557171) @@ -88,6 +88,7 @@ include/ViennaRNA/fold_vars.h include/ViennaRNA/gquad.h include/ViennaRNA/grammar.h include/ViennaRNA/hairpin_loops.h +include/ViennaRNA/heat_capacity.h include/ViennaRNA/interior_loops.h include/ViennaRNA/inverse.h include/ViennaRNA/io/file_formats.h @@ -167,6 +168,7 @@ include/ViennaRNA/utils/svm.h include/ViennaRNA/utils/units.h include/ViennaRNA/vrna_config.h include/ViennaRNA/walk.h +include/ViennaRNA/zscore.h include/g2.h include/g2_FIG.h include/g2_PS.h